Pairwise Alignments

Query, 315 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 321 a.a., arabinose ABC transporter permease from Pseudomonas simiae WCS417

 Score = 81.3 bits (199), Expect = 3e-20
 Identities = 70/304 (23%), Positives = 139/304 (45%), Gaps = 15/304 (4%)

Query: 12  LVIPALSLSLLLAAVF---WLQPRAMSYIGLNLLFNLAVPIALATIAQMLVMAVNDLDLS 68
           +++ ALS+  +L+A+F   +L P  M  +GL +       + +A    +  +A    DLS
Sbjct: 25  MLLAALSI-FVLSALFIDNFLSPLNMRGLGLAIS-----TVGIAACTMLFCLASGHFDLS 78

Query: 69  MGAFVSFVACVTATFLRDAPAIGILILAGAVAAYAAIG----VVIHLRNLPSIVVTLGMS 124
           +G+ ++    V    +RD  ++ +L ++ A+A    +G    +VI    + +++ TL   
Sbjct: 79  VGSVIACAGVVAGIVIRDTDSV-VLGVSAALAMGLVVGLINGIVIAKLRINALIATLATM 137

Query: 125 FVWGGLAVLLLPAPGGQAPDWVRWLMTVKPPLA-PMAIVASIIIAVIAHFIVKRSSLGVL 183
            +  GLA +          D   ++      L  P+ I+ +++  V   +++  ++ G  
Sbjct: 138 QIVRGLAYIFSNGKAVGVMDEGFFVFGNGQLLGVPVPIIITVLCFVFFGWLLNYTTYGRN 197

Query: 184 IRGVGGNQRSVERAGWSIVAARATAYALAGLFAVLAGIALVGLTTSADANIALRYTLLSI 243
              +GGNQ +   AG ++   +   +A+ GL   LAG+ L    TS    I   + L  I
Sbjct: 198 TMAIGGNQEAALLAGVNVDRTKIIIFAVHGLIGALAGVILASRMTSGQPMIGQGFELTVI 257

Query: 244 AGVILGGGEFTGGRVSPIGAVIGALTLTLASSFLSFLRISPDWQIGAQGAILIIVLALRL 303
           +  +LGG   +GG       + G L L +  + ++   I   +Q   +G+IL++ + +  
Sbjct: 258 SACVLGGVSLSGGIGMIRHVIAGVLILAIIENAMNLKNIDTFYQYVIRGSILLLAVIIDR 317

Query: 304 MLNR 307
           M  R
Sbjct: 318 MKQR 321