Pairwise Alignments

Query, 315 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 330 a.a., ribose ABC transporter permease from Pseudomonas simiae WCS417

 Score =  103 bits (256), Expect = 7e-27
 Identities = 71/287 (24%), Positives = 138/287 (48%), Gaps = 9/287 (3%)

Query: 17  LSLSLLLAAVFWLQPRAMSYIGLNLLFNLAVPIALATIAQMLVMAVNDLDLSMGAFVSFV 76
           ++L ++LA+  +L    +S I   +  N     A+  +    V+    +DLS+G  ++  
Sbjct: 41  VTLVMILASDTFLTASNLSNIARQVSIN-----AIIAVGMTCVILTGGIDLSVGPVMALS 95

Query: 77  ACVTATFLRDAPAIGILILAGAVAAYA---AIGVVIHLRNLPSIVVTLGMSFVWGGLAVL 133
             +TA  +      G+ I AG +   A     G+ +   ++P I+VTL    +  GL ++
Sbjct: 96  GTLTAGLMVAGLPPGLAIGAGMLIGVAFGIGNGLFVAYLHMPPIIVTLATMGIARGLGLM 155

Query: 134 LLPA-PGGQAPDWVRWLMTVKPPLAPMAIVASIIIAVIAHFIVKRSSLGVLIRGVGGNQR 192
                P    PDW  +          + I+  ++  ++A+ +++ + +G  I  +GGN+ 
Sbjct: 156 YTDGYPISGLPDWFAFFGRESLFGIQVPILIMLLTYLVAYVLLQHTRIGRYIYAIGGNEE 215

Query: 193 SVERAGWSIVAARATAYALAGLFAVLAGIALVGLTTSADANIALRYTLLSIAGVILGGGE 252
           +V  +G      +   Y ++GL A +AG+ L     S   N  + + L +IA V+LGG  
Sbjct: 216 AVRLSGVRAARFKLLVYGISGLTAAIAGLVLTSRLMSGQPNAGVSFELDAIAAVVLGGAS 275

Query: 253 FTGGRVSPIGAVIGALTLTLASSFLSFLRISPDWQIGAQGAILIIVL 299
             GGR   +G ++GA+ L + ++ L+ L +SP  Q   +G I+++ +
Sbjct: 276 IAGGRGVIVGTLLGAMLLGVLNNGLNMLGVSPYVQSVIKGGIILLAI 322