Pairwise Alignments

Query, 315 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 314 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Variovorax sp. SCN45

 Score =  114 bits (284), Expect = 4e-30
 Identities = 92/309 (29%), Positives = 142/309 (45%), Gaps = 25/309 (8%)

Query: 11  RLVIPALSLSLLLAAVF-WLQPRAMSYIGLNLLFNLAVPIALATIAQMLVMAVNDLDLSM 69
           R + PAL L ++L     ++ P   +  GL      A P+ + T     V+     DLS 
Sbjct: 5   RNINPALVLLVVLVCTMVFMSPLYQTAPGLMSFLQRAAPLVILTCGASFVLIAGGFDLSS 64

Query: 70  GAFVSFVACVTATFLRDAPAIGILILAGAVAAYAAIGV----VIHLRNLPSIVVTLG--- 122
           GA ++ V    A        +    +A A A   A+G+    V+    +PSI+ TLG   
Sbjct: 65  GALITLVVIGCALITNGDADMTWTAVAAAYAMGLAVGLLNGLVVTRLKVPSIIATLGGLL 124

Query: 123 ----MSFVWGGLAVLLLPAPGGQAPDWVRWL---MTVKPPLA---PMAIVASIIIAVIAH 172
               ++ VW G       AP G  P  +R+L   +  + PL    P+A++   +   +  
Sbjct: 125 SIKGIAMVWSG------GAPSGYLPQNLRYLGRGVLREVPLTGTLPIAVIVLAVFVALCF 178

Query: 173 FIVKRSSLGVLIRGVGGNQRSVERAGWSIVAARATAYALAGLFAVLAGIALVGLTTSADA 232
           +++ R++ G L+  +G N  + E AG  +   R  A+ L+ L AV AGI L G +     
Sbjct: 179 WLMHRTNFGRLVLMIGDNPVAAELAGAPVRRVRVAAFVLSSLSAVTAGILLGGFS-GVSV 237

Query: 233 NIALRYTLLSIAGVILGGGEFTGGRVSPIGAVIGALTLTLASSFLSFLRISPDWQIGAQG 292
           ++   Y L +IA  ++GG    GGR S  GA IGALTL    + L+ L  S   ++  QG
Sbjct: 238 DVGTGYDLQAIAAAVIGGVVLLGGRGSIPGACIGALTLYTLFTVLNLLGFSEPLRVAVQG 297

Query: 293 AILIIVLAL 301
            ILI   AL
Sbjct: 298 LILIGAAAL 306