Pairwise Alignments

Query, 315 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 321 a.a., arabinose ABC transporter permease from Pseudomonas simiae WCS417

 Score =  101 bits (252), Expect = 2e-26
 Identities = 85/307 (27%), Positives = 145/307 (47%), Gaps = 13/307 (4%)

Query: 6   RQFGKPWVWSWLAAFIVWFLTIMVTGGAGTLGLSQAALTFAAFSVIVGIGQMFVI-TLGP 64
           R+F   WV    A  I     + +      L +    L  +     VGI    ++  L  
Sbjct: 17  RKFLDDWVMLLAALSIFVLSALFIDNFLSPLNMRGLGLAIST----VGIAACTMLFCLAS 72

Query: 65  GNIDLSVPATMTLAGTVALKLMNVENGMVLPGLLLAVFIGLGVGLCNYTLIKALRIPPII 124
           G+ DLSV + +  AG VA  ++   + +VL G+  A+ +GL VGL N  +I  LRI  +I
Sbjct: 73  GHFDLSVGSVIACAGVVAGIVIRDTDSVVL-GVSAALAMGLVVGLINGIVIAKLRINALI 131

Query: 125 ATLSMSFVVQSGAIWTNRGLRIKPPSVLAE----FTTTNTLGVPNVAIVAVLISVLAWIL 180
           ATL+   +V+  A   + G   K   V+ E    F     LGVP   I+ VL  V    L
Sbjct: 132 ATLATMQIVRGLAYIFSNG---KAVGVMDEGFFVFGNGQLLGVPVPIIITVLCFVFFGWL 188

Query: 181 LEKTIYGRWISAIGQSMPAARMAGIPVDGTRFVTYLFCAVLASISGYLLACFSGGAALNM 240
           L  T YGR   AIG +  AA +AG+ VD T+ + +    ++ +++G +LA         +
Sbjct: 189 LNYTTYGRNTMAIGGNQEAALLAGVNVDRTKIIIFAVHGLIGALAGVILASRMTSGQPMI 248

Query: 241 GAEYLLMSIAVVVIGGTAVAGGDSNVPGIWGASLFMFLVVSMLNTYGLGAGIRLIMTGLI 300
           G  + L  I+  V+GG +++GG   +  +    L + ++ + +N   +    + ++ G I
Sbjct: 249 GQGFELTVISACVLGGVSLSGGIGMIRHVIAGVLILAIIENAMNLKNIDTFYQYVIRGSI 308

Query: 301 IISVIML 307
           ++  +++
Sbjct: 309 LLLAVII 315