Pairwise Alignments

Query, 315 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 330 a.a., ribose ABC transporter permease from Pseudomonas simiae WCS417

 Score =  106 bits (265), Expect = 7e-28
 Identities = 83/312 (26%), Positives = 149/312 (47%), Gaps = 10/312 (3%)

Query: 4   LIRQFGKPWVWSWLAAFIVWFLTIMVTGGAGTLGLSQAALTFAAFSVIVGIGQMFVITLG 63
           L R    P  + ++   +V  + I+ +    T           + + I+ +G   VI  G
Sbjct: 23  LARLVRSPAFYPFVGLVVVTLVMILASDTFLTASNLSNIARQVSINAIIAVGMTCVILTG 82

Query: 64  PGNIDLSVPATMTLAGTVALKLM--NVENGMVL-PGLLLAVFIGLGVGLCNYTLIKALRI 120
              IDLSV   M L+GT+   LM   +  G+ +  G+L+ V  G+G GL     +  L +
Sbjct: 83  --GIDLSVGPVMALSGTLTAGLMVAGLPPGLAIGAGMLIGVAFGIGNGL----FVAYLHM 136

Query: 121 PPIIATLSMSFVVQSGAIWTNRGLRIKP-PSVLAEFTTTNTLGVPNVAIVAVLISVLAWI 179
           PPII TL+   + +   +    G  I   P   A F   +  G+    ++ +L  ++A++
Sbjct: 137 PPIIVTLATMGIARGLGLMYTDGYPISGLPDWFAFFGRESLFGIQVPILIMLLTYLVAYV 196

Query: 180 LLEKTIYGRWISAIGQSMPAARMAGIPVDGTRFVTYLFCAVLASISGYLLACFSGGAALN 239
           LL+ T  GR+I AIG +  A R++G+     + + Y    + A+I+G +L         N
Sbjct: 197 LLQHTRIGRYIYAIGGNEEAVRLSGVRAARFKLLVYGISGLTAAIAGLVLTSRLMSGQPN 256

Query: 240 MGAEYLLMSIAVVVIGGTAVAGGDSNVPGIWGASLFMFLVVSMLNTYGLGAGIRLIMTGL 299
            G  + L +IA VV+GG ++AGG   + G    ++ + ++ + LN  G+   ++ ++ G 
Sbjct: 257 AGVSFELDAIAAVVLGGASIAGGRGVIVGTLLGAMLLGVLNNGLNMLGVSPYVQSVIKGG 316

Query: 300 IIISVIMLAGGR 311
           II+  I ++  R
Sbjct: 317 IILLAIFISRQR 328