Pairwise Alignments

Query, 315 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 314 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Variovorax sp. SCN45

 Score =  121 bits (304), Expect = 2e-32
 Identities = 89/279 (31%), Positives = 140/279 (50%), Gaps = 14/279 (5%)

Query: 46  AAFSVIVGIGQMFVITLGPGNIDLSVPATMTLAGTVALKLMNVENGMVLPGLLLAVFIGL 105
           AA  VI+  G  FV+  G    DLS  A +TL       + N +  M    +  A  +GL
Sbjct: 41  AAPLVILTCGASFVLIAG--GFDLSSGALITLVVIGCALITNGDADMTWTAVAAAYAMGL 98

Query: 106 GVGLCNYTLIKALRIPPIIATLSMSFVVQSGA-IWTN--------RGLRIKPPSVLAEFT 156
            VGL N  ++  L++P IIATL     ++  A +W+         + LR     VL E  
Sbjct: 99  AVGLLNGLVVTRLKVPSIIATLGGLLSIKGIAMVWSGGAPSGYLPQNLRYLGRGVLREVP 158

Query: 157 TTNTLGVPNVAIVAVLISVLAWILLEKTIYGRWISAIGQSMPAARMAGIPVDGTRFVTYL 216
            T TL +  V ++AV +++  W L+ +T +GR +  IG +  AA +AG PV   R   ++
Sbjct: 159 LTGTLPIA-VIVLAVFVALCFW-LMHRTNFGRLVLMIGDNPVAAELAGAPVRRVRVAAFV 216

Query: 217 FCAVLASISGYLLACFSGGAALNMGAEYLLMSIAVVVIGGTAVAGGDSNVPGIWGASLFM 276
             ++ A  +G LL  FSG  ++++G  Y L +IA  VIGG  + GG  ++PG    +L +
Sbjct: 217 LSSLSAVTAGILLGGFSG-VSVDVGTGYDLQAIAAAVIGGVVLLGGRGSIPGACIGALTL 275

Query: 277 FLVVSMLNTYGLGAGIRLIMTGLIIISVIMLAGGRRGMR 315
           + + ++LN  G    +R+ + GLI+I    L   R   R
Sbjct: 276 YTLFTVLNLLGFSEPLRVAVQGLILIGAAALTAWRHQRR 314