Pairwise Alignments

Query, 466 a.a., PilQ2 pilus assembly protein from Sinorhizobium meliloti 1021

Subject, 405 a.a., secretin from Pseudomonas simiae WCS417

 Score =  187 bits (474), Expect = 7e-52
 Identities = 128/368 (34%), Positives = 189/368 (51%), Gaps = 48/368 (13%)

Query: 45  IKVAKGKTVTIRAVQRFDEIVIGDPEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPV 104
           ++V +G    +++      + IGDP+IA V    DR+F + G   G+TS+ ++ A     
Sbjct: 43  VEVGEGLQQELQSPVAITRLAIGDPKIADVRVNGDRNFLLTGVSSGATSLLVWTA----- 97

Query: 105 GIIDIEVTLDTKLLSSTIRQSVPGSSVKVTSANGRIVLSGSATDAVAATQAEQIASRFAG 164
                         + + RQS+     K TSA   + LS S    + +            
Sbjct: 98  -------------CARSPRQSMVFVKGKATSALTSLSLSPSEDPLLPS------------ 132

Query: 165 DEEVINSIKITSSQQVQLNVRFVEINRDVGKELGTQISAAYA-WSNGSVEFNSSPRATSN 223
                         QVQ ++RFVE++R   KE  T++  + A +  GS    S       
Sbjct: 133 --------------QVQTDIRFVEVSRTKLKEASTRLLGSGANFFFGSPNLLSPSEGVFK 178

Query: 224 TPAGSLIGSLIGEGYS-VDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIPI- 281
            P  S  G  +G G   V   I+ALE  G A  LA P+L+A SG+++SFLAGGE PIP+ 
Sbjct: 179 LPV-STDGFNVGFGGGRVKAMINALERSGFAYTLARPSLVAMSGQSASFLAGGEVPIPVP 237

Query: 282 SEQDGTITVSYKKFGVGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVGNIAIPGFSVR 341
           S    TI++ YK+FG+ L  TPTV+    I+L + PEVS +D + + ++  I +P  +VR
Sbjct: 238 SAGSDTISIEYKEFGIRLTLTPTVIDRSRISLKVAPEVSELDYSNAVQIQGIQVPALTVR 297

Query: 342 RARTSVDLKSGQSFMIAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIV 401
           R  TSV L  G+SF+I+GL+ S N     + PGLG +PILGA F      R E +L++IV
Sbjct: 298 RTDTSVSLADGESFVISGLISSNNRSTINKFPGLGDIPILGAFFRDSNISREEKELLMIV 357

Query: 402 TPHLVKPI 409
           TPHLV+P+
Sbjct: 358 TPHLVQPL 365