Pairwise Alignments

Query, 334 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 337 a.a., TRAP-type transport system, periplasmic component from Variovorax sp. SCN45

 Score = 56.6 bits (135), Expect = 9e-13
 Identities = 81/336 (24%), Positives = 136/336 (40%), Gaps = 37/336 (11%)

Query: 5   RRKLTTSAVAAICSLVASTAGAQTVLKASHQFPGGKGDIRDEMVQLIAREVAAA-----N 59
           R  L T+A A+  +L    A AQ   K +  +           + L A+E+A A     N
Sbjct: 6   RTVLRTAAAASTLALPLRQALAQ---KNAFNYKYANNLPVSHPMNLRAKEMADAIRAETN 62

Query: 60  VGLEIQVFPGSSLYKPNDQWNAVTRGLLDMTSFPLDYASGRHPEFSATLMPGLVGNFDRA 119
             ++IQ+FP + L    D  + +  G ++  +      S   P  S + +     ++   
Sbjct: 63  GQVDIQIFPNNQLGSDTDVLSQLRSGGVEFFTLSGLILSTLVPSASISGVGFAFPDYASV 122

Query: 120 MRLNDSEFMGDIKKVIENAGALVIADAWLSG--AFASKKNCITSPDTIKGQVIRA-AGPA 176
            +  D +    I+  I  A  + +   W +G     S    I SP  +KG  IR    P 
Sbjct: 123 WKAMDGDLGSHIRTQIAKANIVAMDKIWDNGFRQITSSSKPIASPADLKGFKIRVPVSPL 182

Query: 177 FEEMLVEAGASISSMPSSEIYTGMQTGVLDAANTSSASFVSYRLFEQAKCLTAPGE--NA 234
           +  M     AS +S+  +E+Y+ +QT ++D      A   + +L+E  K  +      + 
Sbjct: 183 WTSMFKALEASPTSINFAEVYSALQTKIVDGQENPLAIISTAKLYEVQKYCSMSNHMWDG 242

Query: 235 LWFMYEPVLVSKRVFDGLTEEQQ----KAILAAG--EKAEV------YFNEEVRKGDQV- 281
            WF     L ++R +D +  + Q    K I AAG  E+A+V         E   KG Q+ 
Sbjct: 243 FWF-----LANRRAWDKMPADLQAIVAKHINAAGMRERADVAELNANLQKELSAKGMQIN 297

Query: 282 ------MIDTYKKAGVEVVEMSKEDYDAWLELAKAS 311
                   D  +KAG      SK   +AW  L +++
Sbjct: 298 QPDPAAFRDQLRKAGFYAEWKSKYGDEAWALLERST 333