Pairwise Alignments

Query, 334 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 345 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Variovorax sp. SCN45

 Score = 57.4 bits (137), Expect = 5e-13
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 39/350 (11%)

Query: 4   FRRKLTTSAVAAICSLVAST-AGAQTVLKASHQFP---------GGKGDIRDEMVQLIAR 53
           FRR L   A AA    + ST A AQ   K  ++           G  G I  +MV+    
Sbjct: 3   FRRTLLGLAAAATALGMFSTGAMAQAAYKPEYKMSLVLGPPTPWGQAGKIWADMVK---- 58

Query: 54  EVAAANVGLEIQVFPGSSLYKPND--QWNAVTRGLLDMTSFPLDYASGRHPEFSATLMPG 111
                   + I+++PG SL + +   +++A+ +G++DM        S +  + +   MP 
Sbjct: 59  --ERTQGRINIKLYPGVSLIQGDQTREFSALRQGVIDMAVGSTINWSPQVKQLNLFSMPF 116

Query: 112 LVGNFDRAMRLNDSEFMGDIKKVIENAGALVIADAWLSGAF---ASKKNCITSPDTIKGQ 168
           L+ ++     L   E   ++ K +E AG  V+  AW    F    + K  I SP  IKG 
Sbjct: 117 LMPDYAAIDALTQGEVGKEMFKTLEKAG--VVPLAWGENGFREITNSKKPIKSPADIKGM 174

Query: 169 VIRAAG-PAFEEMLVEAGASISSMPSSEIYTGMQTGVLDAANTSSASFVSYRLFEQA-KC 226
            IR  G P + +M    GA+ + M  ++    + +G +D        F   ++     K 
Sbjct: 175 KIRVVGSPIYSDMFTALGANPTQMSWADAQPALASGAVDGQENPLFLFTVLKMQTVGQKF 234

Query: 227 LTAPGENALWFMYEPV--LVSKRVFDGLTEEQQ----KAILAAGEKAEVYFNEEVRKGDQ 280
           +T  G     ++ +P+  +V+K ++   T   Q    +A + AG++  V   + + + D+
Sbjct: 235 VTTWG-----YVADPLVFVVNKEIWASWTPADQAIVRQAAIDAGKEEIVLARKGLVETDK 289

Query: 281 VMIDTYKKAGVEVVEMSKEDYDAWLELAKASSYKNFAANVPGGDKLIEKA 330
            ++      GV V  ++  + + +++ A    Y  + + V  G  L+ KA
Sbjct: 290 PVLKDIAGMGVTVTSLTPAEREEFVK-ATRPVYDKWKSTV--GTDLVAKA 336