Pairwise Alignments

Query, 180 a.a., RNA polymerase ECF sigma factor from Sinorhizobium meliloti 1021

Subject, 168 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score =  101 bits (252), Expect = 6e-27
 Identities = 67/155 (43%), Positives = 92/155 (59%), Gaps = 8/155 (5%)

Query: 7   DVGERLMAFLPNLRRFAISLCGSRDVADDLVQSACERALAS--AERFEPGTRFDAWIFRI 64
           ++ E+L   +P LRRFA+SL  +   ADDLVQS  ERA+ S   +R E   R  AW+F I
Sbjct: 3   ELDEQLRELIPRLRRFAVSLTRNASSADDLVQSTLERAIISWADKRVEGDLR--AWLFSI 60

Query: 65  LRNLWIDQVRRQKTAGVQDDITERHDIAGSSGERETEARLTLKTVAEAITELPDEQREVV 124
           L   ++D  RR +      +     D A  S ER   A+ TL    +A  +L  EQR ++
Sbjct: 61  LYRQFLDAHRRTRRYARMLEFFTGRDDAQPSVERTVIAQSTL----QAFDQLNTEQRALL 116

Query: 125 LLVCVEELSYREAADVMGIPIGTVMSRLMRARRSL 159
           L V VE LSY+E A+++ +PIGTVMSRL RAR++L
Sbjct: 117 LWVSVEGLSYKEIAEILEVPIGTVMSRLSRARQAL 151