Pairwise Alignments

Query, 180 a.a., RNA polymerase ECF sigma factor from Sinorhizobium meliloti 1021

Subject, 192 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 76.3 bits (186), Expect = 3e-19
 Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 3/166 (1%)

Query: 8   VGERLMAFLPNLRRFAISLCGSRDVADDLVQSACERALASAERFEPG-TRFDAWIFRILR 66
           V E +   LP L   A  + G  D A D+ Q +  R    A  +  G  RFD W+ R+  
Sbjct: 22  VNEMVTRKLPRLLALASRILGDADEAKDVAQESFLRIWRQAASWRSGEARFDTWLHRVAL 81

Query: 67  NLWIDQVRRQKTAGV-QDDITERHDIAGSSGERETEARLTLKTVAEAITELPDEQREVVL 125
           NL  D++RR+K   + ++++ E  D A    E+   A  + + +A A+  LP+ QRE ++
Sbjct: 82  NLCHDRLRRRKQRPLSEEEVLELADSAAPLDEQLESADRSAR-MAAALAALPERQREAIV 140

Query: 126 LVCVEELSYREAADVMGIPIGTVMSRLMRARRSLAEAAGITQATGR 171
           L   +ELS  +AA +M I +  + S L RARR L      T    R
Sbjct: 141 LQYYQELSNIDAAALMNISVEALESLLSRARRQLRSQLADTSGLAR 186