Pairwise Alignments

Query, 180 a.a., RNA polymerase ECF sigma factor from Sinorhizobium meliloti 1021

Subject, 171 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

 Score =  103 bits (256), Expect = 2e-27
 Identities = 67/164 (40%), Positives = 93/164 (56%), Gaps = 9/164 (5%)

Query: 12  LMAFLPNLRRFAISLCGSRDVADDLVQSACERALASAERFEPGTRFDAWIFRILRNLWID 71
           L+  +P+LRR+A +L G+   ADDLVQ   ERA +    +  G+   AW+F ++ N++  
Sbjct: 6   LVEHIPSLRRYARALTGNAWAADDLVQDTLERACSKWRLWVVGSDLRAWLFTVMHNIFAS 65

Query: 72  QVRRQKTAGVQ---DDITERHDIAGS-SGERETEARLTLKTVAEAITELPDEQREVVLLV 127
           QVRR          DD+   H++ G     R  +  L L+     + +LP+EQR V+LLV
Sbjct: 66  QVRRTPPPHAVVPLDDLP--HELHGGIDSGRGQDTSLDLQ---RCLMQLPEEQRAVLLLV 120

Query: 128 CVEELSYREAADVMGIPIGTVMSRLMRARRSLAEAAGITQATGR 171
            +E+LSY E A V+GIP GTVMSRL RAR  L E    T A  R
Sbjct: 121 TLEDLSYAEVAKVLGIPAGTVMSRLSRARVRLQELMDGTSAPVR 164