Pairwise Alignments

Query, 180 a.a., RNA polymerase ECF sigma factor from Sinorhizobium meliloti 1021

Subject, 171 a.a., sigma-70 family RNA polymerase sigma factor from Variovorax sp. OAS795

 Score =  100 bits (249), Expect = 1e-26
 Identities = 62/148 (41%), Positives = 88/148 (59%), Gaps = 9/148 (6%)

Query: 16  LPNLRRFAISLCGSRDVADDLVQSACERALASAERFEPGTRFDAWIFRILRNLWIDQVRR 75
           +P+LRR+A +L G    ADDLVQ   ERA      +  G+   AW+F ++ N++  Q RR
Sbjct: 10  IPSLRRYARALTGDAWAADDLVQDTLERACGKWRLWHVGSDLRAWLFTVMHNIFASQRRR 69

Query: 76  QKTAGVQ---DDITERHDIAGSSGE-RETEARLTLKTVAEAITELPDEQREVVLLVCVEE 131
              A      DD+   H++ G++   R+  + L L+     + +LP+EQR V+LLV +E+
Sbjct: 70  APPAHSLVPLDDVA--HELHGAADPGRDLASGLDLQ---RCLMQLPEEQRAVLLLVSLED 124

Query: 132 LSYREAADVMGIPIGTVMSRLMRARRSL 159
           LSY E A V+GIP GTVMSRL RAR  L
Sbjct: 125 LSYAEVAKVLGIPAGTVMSRLSRARARL 152