Pairwise Alignments

Query, 180 a.a., RNA polymerase ECF sigma factor from Sinorhizobium meliloti 1021

Subject, 171 a.a., RNA polymerase sigma-E factor (sigma-24) protein from Sinorhizobium meliloti 1021

 Score =  113 bits (282), Expect = 2e-30
 Identities = 66/158 (41%), Positives = 95/158 (60%), Gaps = 6/158 (3%)

Query: 5   VKDVGERLMAFLPNLRRFAISLCGSRDVADDLVQSACERALASAERFEPGTRFDAWIFRI 64
           +KD    L++ LP LRRFAI+L  + + ADDLVQ  CERA+A +  +    R ++W++ +
Sbjct: 7   MKDFRRDLVSLLPKLRRFAITLARNANDADDLVQEVCERAIARSHLWNGEGRLESWVYAM 66

Query: 65  LRNLWIDQVRRQK--TAGVQDDITERHDIAGSSGERETEARLTLKTVAEAITELPDEQRE 122
            RNLW+D++R++K  +AG   D+ ER +      E   E       V + I  + +    
Sbjct: 67  TRNLWVDEIRKRKVRSAGAV-DVFERDE---PHVEATAEKAAYANQVQKMILSMSEGLAS 122

Query: 123 VVLLVCVEELSYREAADVMGIPIGTVMSRLMRARRSLA 160
           V LLV VE  SYRE A+++GIP+GTVMSRL  AR  LA
Sbjct: 123 VFLLVNVEGHSYRETAEILGIPVGTVMSRLSTARLRLA 160