Pairwise Alignments

Query, 180 a.a., RNA polymerase ECF sigma factor from Sinorhizobium meliloti 1021

Subject, 189 a.a., RNA polymerase ECF-type sigma factor sigU from Caulobacter crescentus NA1000 Δfur

 Score =  103 bits (258), Expect = 1e-27
 Identities = 59/151 (39%), Positives = 90/151 (59%), Gaps = 5/151 (3%)

Query: 12  LMAFLPNLRRFAISLCGSRDVADDLVQSACERALASAERFEPGTRFDAWIFRILRN-LWI 70
           L+A +P+LR FA SLCG+  +ADDL Q A  +A AS   F  GT   AW F ILRN  + 
Sbjct: 13  LIALIPHLRAFARSLCGNAAMADDLAQEAVAKAWASRGSFTMGTNMKAWTFMILRNQFYS 72

Query: 71  DQVRRQKTAGVQDDITERHDIAGSSGERETEARLTLKTVAEAITELPDEQREVVLLVCVE 130
           D+ R  ++  +  ++ ER  +A ++     ++ + L  + +A+  LP+ QRE ++L+   
Sbjct: 73  DKRRSWRSVALDQEMAERTLVANTN----FDSAIALDDLRQAMLMLPENQREALILIGAG 128

Query: 131 ELSYREAADVMGIPIGTVMSRLMRARRSLAE 161
             SY EAA ++G+ IGTV SR+ RAR  L +
Sbjct: 129 GFSYEEAARMIGVAIGTVKSRVSRARAELVQ 159