Pairwise Alignments

Query, 311 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 336 a.a., dipeptide ABC transporter, permease component (from data) from Pseudomonas simiae WCS417

 Score =  239 bits (610), Expect = 7e-68
 Identities = 133/337 (39%), Positives = 199/337 (59%), Gaps = 28/337 (8%)

Query: 1   MLRFTLRRVLQIIPTVVVVALLIFVIFSVVPGTFAASLFADGRRAADPQMIARLNEEFGL 60
           M  F  RR+  +IPT   + LL F +  ++PG     +   G R  DP+M A+  E  GL
Sbjct: 1   MFSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMM--GERRVDPEMHAQAMERLGL 58

Query: 61  NKPLMERFVTYVTDLAQFDLGTSFRTRQPVIDLINDRMWASLQLAIAAMIFALVISVPLG 120
           NKPL  +++ YV  LAQ DLG S RTR  V         A+L+L++AA++FA ++ +  G
Sbjct: 59  NKPLYAQYLDYVGKLAQGDLGESLRTRTSVWTEFTALFPATLELSMAALLFAGILGLLAG 118

Query: 121 FVAALRPGSVLDTVTMIGAVSGLSMPQFWLGLLMMYLFALQLNWLPSFGYGD-------- 172
            +AAL+ GS+ D   M  +++G SMP FW GL+++  F++ L W P  G  D        
Sbjct: 119 VIAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPR 178

Query: 173 ------------------GSFRNLILPAVTLGVTPLALLARTTRAGVLDVLNADFIRTAH 214
                              +  +LILPA+ LG  PLA++AR TR+ +L+VL  D+IRTA 
Sbjct: 179 TGFMLIDTLLADEPDAFWDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTAK 238

Query: 215 SKGMSEAKVVRWHVARNALVLIVTTVGLQFGSLIGQAVVIEKLFAWPGIGSLLVDSVASR 274
           +KG+S A+VV  H  RNAL+ ++T VGLQ G+L+  AV+ E +F+WPGIG  L++++ +R
Sbjct: 239 AKGLSPARVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGAR 298

Query: 275 DIPVVQGTILVIVLWFLVINTAVDLIYAAIDPRIKQE 311
           D PVVQ  IL+I    +++N  VD++Y   +PRI+ +
Sbjct: 299 DYPVVQNGILLIACLVILVNFVVDILYGFANPRIRHQ 335