Pairwise Alignments

Query, 311 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 327 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  222 bits (565), Expect = 1e-62
 Identities = 126/319 (39%), Positives = 188/319 (58%), Gaps = 13/319 (4%)

Query: 3   RFTLRRVLQIIPTVVVVALLIFVIFSVVPGTFAASLFADGRRAADPQMIARLNEEFGLNK 62
           R  +R   Q +PTV+ V LL F++  ++PG  AA + A    +A  + +A+L   FGL+ 
Sbjct: 8   RTLVRTAWQAVPTVIGVILLNFILMQLIPGD-AADVVAAESGSATAESMAQLRTHFGLDL 66

Query: 63  PLMERFVTYVTDLAQFDLGTSFRTRQPVIDLINDRMWASLQLAIAAMIFALVISVPLGFV 122
           P++++   Y+ +LA F LG S R   PV+ LI  R+  +L L + A+ FAL I +  G V
Sbjct: 67  PVIQQLFAYLNNLAHFSLGISPRYNMPVVSLIGARLGNTLLLMVTALAFALAIGIAAGTV 126

Query: 123 AALRPGSVLDTVTMIGAVSGLSMPQFWLGLLMMYLFALQLNWLP-----SFGYGDGSF-- 175
            A R G   D    + A+   S P FWLGL+ + LF++ L WLP     S G G   +  
Sbjct: 127 MATRVGRWQDRTLSVLALLLYSTPGFWLGLMAIVLFSVHLGWLPTGGSESIGAGYTGWTH 186

Query: 176 -----RNLILPAVTLGVTPLALLARTTRAGVLDVLNADFIRTAHSKGMSEAKVVRWHVAR 230
                R+L+LPA+ +    +A+ +R TRA +L+V   DF+RTA +KG+    V   H+ R
Sbjct: 187 VVDVARHLVLPALAMAGFYIAIFSRLTRAAMLEVSRQDFVRTAEAKGLHPWTVNLRHILR 246

Query: 231 NALVLIVTTVGLQFGSLIGQAVVIEKLFAWPGIGSLLVDSVASRDIPVVQGTILVIVLWF 290
           NAL+ + T  G+ FG+L+G AVV+E +F+WPG+G L  DSVA RD  V+ G +L+  L  
Sbjct: 247 NALIPVTTVAGMHFGTLLGGAVVVETVFSWPGLGRLAFDSVAGRDYTVLLGVLLMSSLLV 306

Query: 291 LVINTAVDLIYAAIDPRIK 309
           +V N  VDL++A +DPRI+
Sbjct: 307 IVANMLVDLLHAWLDPRIQ 325