Pairwise Alignments

Query, 311 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 334 a.a., Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  229 bits (584), Expect = 7e-65
 Identities = 127/336 (37%), Positives = 198/336 (58%), Gaps = 28/336 (8%)

Query: 1   MLRFTLRRVLQIIPTVVVVALLIFVIFSVVPGTFAASLFADGRRAADPQMIARLNEEFGL 60
           M RF L RV  ++PT + + LL F +  +VPG    ++   G R  DP   A L   +G 
Sbjct: 1   MFRFILTRVSLLVPTFIGMTLLAFFLIRLVPGDPIETMA--GERGIDPARHAELRTAYGF 58

Query: 61  NKPLMERFVTYVTDLAQFDLGTSFRTRQPVIDLINDRMWASLQLAIAAMIFALVISVPLG 120
           +KP++ ++  Y+  +   DLG S  T+  V+        A+++LA+ A++FAL++ +P G
Sbjct: 59  DKPVIVQYGIYIGRVLHGDLGKSIITQDTVMSEFLALFPATVELAVCAILFALLLGLPAG 118

Query: 121 FVAALRPGSVLDTVTMIGAVSGLSMPQFWLGLLMMYLFALQLNWLPSFGY---------- 170
            +AA+R  S+ D   M  +++G SMP FW GLL++  F++QL W P  G           
Sbjct: 119 ILAAVRRNSIFDHGVMATSLTGYSMPIFWWGLLLILFFSVQLGWTPVSGRIAVQYYIEPE 178

Query: 171 -----------GD-GSF----RNLILPAVTLGVTPLALLARTTRAGVLDVLNADFIRTAH 214
                      GD G+F     +LILPAV LG  PLA++AR TR+ +L+VL  D+IRTA 
Sbjct: 179 TGFLLIDSLRAGDTGAFWSALHHLILPAVVLGTVPLAVIARMTRSAMLEVLGEDYIRTAR 238

Query: 215 SKGMSEAKVVRWHVARNALVLIVTTVGLQFGSLIGQAVVIEKLFAWPGIGSLLVDSVASR 274
           +KG+S  +VV  H  RNAL+ +VT +GLQ G L   A++ E +F+WPG+G  L++++  R
Sbjct: 239 AKGLSRLRVVGLHALRNALIPVVTVIGLQVGVLFTGAILTETIFSWPGVGKWLIEAIGRR 298

Query: 275 DIPVVQGTILVIVLWFLVINTAVDLIYAAIDPRIKQ 310
           D PV+QG +L++    +++N  VD+ Y  I+PRI++
Sbjct: 299 DYPVLQGGMLLLGGIVMLVNLLVDVAYGVINPRIRR 334