Pairwise Alignments

Query, 311 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 324 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  219 bits (558), Expect = 7e-62
 Identities = 117/321 (36%), Positives = 193/321 (60%), Gaps = 20/321 (6%)

Query: 6   LRRVLQIIPTVVVVALLIFVIFSVVPGTFAASLFADGRRAADPQMIARLNEEFGLNKPLM 65
           LRRVLQ +  VVV+ +++F+    +       +  D  +      IARL    GL++PL 
Sbjct: 6   LRRVLQALGVVVVMTVIVFIGLHAIGNPIDILIGEDMNQQERLAAIARL----GLDQPLW 61

Query: 66  ERFVTYVTDLAQFDLGTSFRTRQPVIDLINDRMWASLQLAIAAMIFALVISVPLGFVAAL 125
            +++ +V       LG SF  ++  + LI  R+ A+++LA AA++ A+V+ VPLG  A +
Sbjct: 62  RQYLAFVDGALHGSLGRSFVYQEDAVRLILQRLPATMELAFAALLMAIVVGVPLGLFAGM 121

Query: 126 RPGSVLDTVTMIGAVSGLSMPQFWLGLLMMYLFALQLNWLPSFGYG-------------- 171
           +P   +    M  ++ G S+P FW+ L+++ +F++QL WLP+ G G              
Sbjct: 122 KPEHPVSRTLMATSIVGFSLPAFWVALMLIMVFSVQLGWLPASGRGATRELFGVQWSWLT 181

Query: 172 -DGSFRNLILPAVTLGVTPLALLARTTRAGVLDVLNADFIRTAHSKGMSEAKVVRWHVAR 230
            DG +++L+LPA  L +  ++L+ R TRAGV +VL  D+++ A +KG++  +VV  HV R
Sbjct: 182 LDG-WQHLLLPAFNLALFKISLVLRLTRAGVREVLPQDYVKFARAKGLTPTRVVLMHVMR 240

Query: 231 NALVLIVTTVGLQFGSLIGQAVVIEKLFAWPGIGSLLVDSVASRDIPVVQGTILVIVLWF 290
           N ++ +VT +GL+ G+ I  AVV E +FAWPG G L++DS+ S D PVV   ++V+V+ F
Sbjct: 241 NTMIPLVTVLGLELGATIAYAVVTESIFAWPGAGKLILDSINSLDRPVVVAYLMVVVVIF 300

Query: 291 LVINTAVDLIYAAIDPRIKQE 311
           + +N  VDL+Y  +DPR++ E
Sbjct: 301 VTLNLIVDLLYKLLDPRVRLE 321