Pairwise Alignments

Query, 530 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 526 a.a., putative Opine ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

 Score =  149 bits (375), Expect = 3e-40
 Identities = 146/546 (26%), Positives = 240/546 (43%), Gaps = 57/546 (10%)

Query: 2   LKRLTLAAMLSLGVAAGALAAGERHGGTLVFTAPYGSSFATLDVQSSPNTQEEFITQAIH 61
           L+   LAA+++L      LA  +      +  +P  +   +LD   +    ++ I   + 
Sbjct: 8   LRSSALAALVTLS-GISPLALAQDSARATISVSPGIADITSLDPHRASLVGDKGIVAEMF 66

Query: 62  RALYSWDSNQNKPVL---ELATSEEVSEDGKVHTYHLRKNAVFHNGK-PLTADDIIYSYK 117
            AL  +    + P     +LA   E S+D KV T+ LRK  +FH G   L A D++YS +
Sbjct: 67  NALVRFPPGSSDPAALEADLAERWESSDDKKVWTFFLRKGVMFHGGYGELKAADVVYSLQ 126

Query: 118 RIANPENAFPGASFIAVIKGAEDYIAGKADEISGLKKIDDHTLEITYTGTINPGFPLMQN 177
           R A+P+ +   A+F A+ K               ++ +DD+T+++T      P    +  
Sbjct: 127 RAADPKRSSFSANFTALEK---------------VEALDDYTVKVTLK---YPDTAFLGR 168

Query: 178 TTVIYPSNVEGEST-------FGKNPVGLGAFVFKEHVPGSQVVVEKFDKYYEEGRPYLD 230
            +  +   +  ++        +G+ P+G G F F EH+    V +   D+Y+  G+P L 
Sbjct: 169 VSNYHGGQIVSKAAAEKLGERYGQAPIGTGPFAFSEHITQQYVKLVANDQYFR-GKPKLG 227

Query: 231 RINIVLMAEDAARDVAFRNKEIDVSILGPTQYQAYQGEE--GLKDHLLEVAEVYTRNIGF 288
            I   ++  D+AR++AF + E+D+ +LG  + +  +     G+   + E AE   R +  
Sbjct: 228 AIVYRMIPSDSARELAFASDELDL-MLGKREQRWVERSRARGVNVDVFEPAEF--RTLFL 284

Query: 289 NPAFEPFKDKRVRQAINHAINAPLIIERLVKNKAYPASGWLPISSPAFDKDKAPYAYDPE 348
           N   +P  D +VRQAI  ++N   II    K+ A      +P      D    PYAYDP 
Sbjct: 285 NRNIKPLDDVKVRQAIAASVNINEIIRYAGKDVADGGCSIIPNGYQGLDCSAGPYAYDPA 344

Query: 349 KAKALLAEAGYADGFEFEVTASPNESWGVPIVEAILPMLKKVGITVKPKPVESSTLGEAV 408
            AKALLA AGY +G + +   S N +  +PI+E I   L K GIT++ + V+ +T     
Sbjct: 345 HAKALLASAGYPNGLKLKSVVS-NAAPQLPIMEIIQAQLAKAGITLEMEVVDHATYQAKS 403

Query: 409 TTNNFQAFIWSNLSGPDPLNALRCYYSKT----AQSACNYTSYASPEFDKLYEAAQQERD 464
             +      +     P     L  +Y       A +A +   + S   D +   A+ E D
Sbjct: 404 RQDQSAIVFYGAARYPGADYWLTEFYDSASAIGAPAAMSNFGHCSVADDAI-RKARVEAD 462

Query: 465 SAKQNDLLRQANNIVQDDA---------PVWFFNYNKAVMAYQPWIHG---LVPNATELA 512
              Q DL ++A   + DD           VW      A + Y   +HG   L P  TEL 
Sbjct: 463 PQTQLDLWKKAQVQIHDDVCAIPLFGLKQVW---AKAASVDYGYVLHGALNLQPPVTELT 519

Query: 513 IQPYDE 518
               D+
Sbjct: 520 TVKRDD 525