Pairwise Alignments

Query, 222 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 220 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  212 bits (540), Expect = 4e-60
 Identities = 109/220 (49%), Positives = 154/220 (70%), Gaps = 3/220 (1%)

Query: 3   EFNFAPVLASFDQLLVGAWLTVRLSCAAMLIGLVVSVFCAWGKTAGPAILRHVIDGYIEI 62
           EF+F  VL+ +  LL G   T+ L+    ++G++V  FCAW +  GPA LR V+  Y+E+
Sbjct: 4   EFDFGAVLSEWPLLLRGVAWTIGLTAVGTVLGMIVGTFCAWARANGPAWLRIVVGTYVEL 63

Query: 63  IRNTPFLVQIFFIFFGMPSLGLRLSPNSAALLALVVNFGAYGTEIIRAGIESIHKGQVEA 122
           IRNTPF+VQ+FFIFFG+P+ G++LSP  A+++A+V+N GAY TEIIRAGIE+  KGQ+EA
Sbjct: 64  IRNTPFIVQLFFIFFGLPAAGVKLSPEVASVIAMVLNLGAYSTEIIRAGIEATPKGQIEA 123

Query: 123 GWALGLSRPQIFRYVVMKPALRTVYPALTSQFIYLMLNTSVVSVISADDLAAAGNDLQSA 182
             +L LS+ Q+F  VV+ PAL+ V+PA+ SQ + +ML ++V   IS ++L+ A N +QS 
Sbjct: 124 AVSLALSKSQVFLRVVLPPALKKVWPAMVSQIVIVMLGSAVCGQISTEELSYAANLIQSR 183

Query: 183 TFASFEVYIAVTLIYLALSVGFSALFYALEKAAFKYPLGR 222
            F +FE +I  TLIYLALSV   AL   L+ A  K+  GR
Sbjct: 184 NFRAFEAFIVATLIYLALSV---ALRRLLDWAGPKFFFGR 220