Pairwise Alignments

Query, 222 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 227 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  209 bits (531), Expect = 4e-59
 Identities = 106/215 (49%), Positives = 146/215 (67%)

Query: 2   YEFNFAPVLASFDQLLVGAWLTVRLSCAAMLIGLVVSVFCAWGKTAGPAILRHVIDGYIE 61
           Y+F+FAPVLA +  LL GAW TV+LS  A ++G  +   CA G+ +    LR +  GY+E
Sbjct: 3   YQFDFAPVLAQWPLLLEGAWTTVQLSFLATVLGFALGTVCALGRNSKHGWLRGLTGGYVE 62

Query: 62  IIRNTPFLVQIFFIFFGMPSLGLRLSPNSAALLALVVNFGAYGTEIIRAGIESIHKGQVE 121
            IRNTP L+Q +F+ FG+ S G+ +     A+LALVVN GAY  EIIRAGIESIHKGQ+E
Sbjct: 63  AIRNTPLLIQSYFLIFGLSSAGVTMPIMVGAVLALVVNIGAYSCEIIRAGIESIHKGQLE 122

Query: 122 AGWALGLSRPQIFRYVVMKPALRTVYPALTSQFIYLMLNTSVVSVISADDLAAAGNDLQS 181
           A   LGLS+ Q+F +V+++PA+  VYPAL SQF+ LML +S++S I A++L    N +QS
Sbjct: 123 AAECLGLSKVQVFWHVILRPAVERVYPALASQFVLLMLASSIMSSIGAEELFGVANRIQS 182

Query: 182 ATFASFEVYIAVTLIYLALSVGFSALFYALEKAAF 216
            TF +FE++I + ++YLALS      F+ L    F
Sbjct: 183 DTFRNFEIFIVLWVVYLALSYAMRLGFWLLGMIVF 217