Pairwise Alignments

Query, 327 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 325 a.a., D-ribose ABC transporter, permease component RbsC (from data) from Pseudomonas simiae WCS417

 Score =  149 bits (376), Expect = 9e-41
 Identities = 100/311 (32%), Positives = 162/311 (52%), Gaps = 15/311 (4%)

Query: 16  GLA-LLFVLVLVFQAKSNGILLSFENMRGVMGLLPEMALVAIGVTLLMICGEFDLSVGSV 74
           GLA  L  ++ +F   S+  L S++    +   +P++ ++A+G+T ++I G  DLSVGSV
Sbjct: 22  GLAGALLAMIALFSVLSDHFL-SYDTFSTLANQIPDLMVLAVGMTFILIIGGIDLSVGSV 80

Query: 75  FALMPMSMAV-LLNSGVPFTVAVLLGLMICGAIGFINGYVTLQFSIPSFITTLGMLFIAR 133
            AL   +++V +L  G     A +LG+      G I G +T+ + IPSFI +LG+L +AR
Sbjct: 81  LALAASAVSVAILGWGWSVLPAAVLGMGCAALAGTITGSITVAWRIPSFIVSLGVLEMAR 140

Query: 134 SLTIVISGGFPPLLPPDLPTWLFTDYIWQGSP--FRMSFLWFVVIAALVAALLSLTN--F 189
            +   ++G            ++   + W  +P  F +S  + + +  ++AA L LT   F
Sbjct: 141 GVAYQMTGS--------RTAYIGDSFAWLSNPIAFGISPSFIIALLVIIAAQLVLTRTVF 192

Query: 190 GNWIRATGGFNEAAASMGIPVKRVKIVCFMLCSVLAGFAGLLQVLRLGSPLPSIGEGLEL 249
           G ++   G   EA    GI  K  KI+ F L  +LAG A L Q+ RL +  P+ G GLEL
Sbjct: 193 GRYLIGIGTNEEAVRLAGINPKPYKILVFSLMGLLAGVAALFQISRLEAADPNAGSGLEL 252

Query: 250 QAVAAAVIGGTALAGGIGTVFGAIIGTLLIRTIDNGLVLSRVDANWFKFAIGVLTMFAVI 309
           Q +AA VIGGT+L GG G+V     G L+I  +  GL          +   G + + AV+
Sbjct: 253 QVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGATEPTKRIITGAVIVIAVV 312

Query: 310 ANAWMGKMSRK 320
            + +  + + +
Sbjct: 313 LDTYRSQRASR 323