Pairwise Alignments

Query, 424 a.a., ABC transporter for Lactose, periplasmic substrate-binding component (from data) from Sinorhizobium meliloti 1021

Subject, 436 a.a., sugar ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 53.5 bits (127), Expect = 1e-11
 Identities = 83/378 (21%), Positives = 153/378 (40%), Gaps = 66/378 (17%)

Query: 12  IAGLALAGASFLGVTAAQAKEITIWCWDPNFNVAIMKEAGARYTKTHPDVTFNIVDFAKL 71
           ++GLALA      + +  A  +TI   + N ++  M+     + + HPD+  N V   + 
Sbjct: 11  LSGLALA------IPSHAADTVTIATVN-NSDMIRMQRLSKVFEEQHPDIKLNWVVLEEN 63

Query: 72  DVEQKLQTGLSSGTADALPDIVLIEDY-----GAQKYLQSFPGAFAPLSGTVDYSGFAPY 126
            + Q+L T ++  T     D++ I  Y     GA+ +L+        L    D     P 
Sbjct: 64  VLRQRLTTDIA--TQGGQFDVLTIGTYETPLWGAKHWLEPL----TQLPPDYDADDIFPS 117

Query: 127 KVELMTLDGQVYGMPFDSGVTGLYYRKDYLEAAGFKPEDMQDLTWDRFIEIGKQVEEK-- 184
             + ++++  +Y +PF    T  YYR D  + AG         TW +  E   ++  K  
Sbjct: 118 VRQGLSVNNTLYALPFYGESTVTYYRTDLFKQAGLSMP--AHPTWSQLGEFAAKLTAKDK 175

Query: 185 -------TGKKMMGLDPNDAGLVRIIMQSAGQWYFDKEGKPNIAGNAALKAALETIGKIM 237
                   GK   G    +  L+  +  + G  +FD++ KP +       AA   +  + 
Sbjct: 176 GQYGMCLRGKAGWG---ENIALLSTMANAFGARWFDEQWKPELTSPEWTAAANFYVNTLK 232

Query: 238 QANIYKP----ANGWSDWVGTFTSGDVATVVTGVWITGTV-------KAQPDQSGNWGVA 286
           Q   Y P    +NG+++ +  F SG  A     +W+  +V       K+Q   + + G A
Sbjct: 233 Q---YGPPGVSSNGFNETLALFNSGKCA-----IWVDASVAGSFTTDKSQSKVADSVGFA 284

Query: 287 PIPALSIEGATHASNLGGSSWY-----VLESSEEKAEAIDFLNEIYAKDIDFYQKILQDR 341
             P       T  ++ G S  Y     +  +S+ K  A  F++   +KD   Y +++ D+
Sbjct: 285 AAP-------TEVTDKGSSWLYAWSLAIPATSKHKDAAKAFISWATSKD---YIQLVADK 334

Query: 342 GAVGSLLAARGGAAYEAA 359
             + ++      + Y  A
Sbjct: 335 EGITNVPPGTRQSTYSEA 352