Pairwise Alignments

Query, 693 a.a., ABC transporter for D-Raffinose, periplasmic substrate-binding protein (from data) from Sinorhizobium meliloti 1021

Subject, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 61.2 bits (147), Expect = 1e-13
 Identities = 92/352 (26%), Positives = 146/352 (41%), Gaps = 69/352 (19%)

Query: 144 LFQVEADDMEPLPNLAKSWDWSEDGRKLTMHLIEGAKWSDGD------PFDADDVMFYWE 197
           L Q +    E  P LA SWD S+DG   T HL +G K+   D       F+ADDV+F + 
Sbjct: 61  LTQFKRGGTEVEPGLATSWDISQDGLTYTFHLRDGVKFHTTDFFSPTRDFNADDVLFTF- 119

Query: 198 DNVLDSSVSPLNGATPE------TFGEGTTLK---KIDQYTVEWTFK--EAFPRQHLFAM 246
            N L  + SP   A P         G  TT+K   K+D +TV +     +A   Q+L AM
Sbjct: 120 -NRLLDAQSPFRQAYPSESPYFTDMGLNTTIKSVDKLDDHTVRFNLNNVDASFVQNL-AM 177

Query: 247 AYGTFCPGPSHILKTKHPKYAGTTYNEYKNGFPAEYMNLPV-MGAWVPVAYRPDDIIVLR 305
           ++ +           +  +YA       K G   E    PV  G +V   Y+ D  I   
Sbjct: 178 SFAS----------VQSAEYAAQL---LKQGKAEEINQKPVGTGPFVFKRYQKDSQIRYV 224

Query: 306 RNPYYWKVDEAGNQLPYLNELHYKLSTWADRDVQAI-AGSGDISNLEQPENFVESLKRAA 364
            N  YWK ++       L+ L + ++  A   +Q + AG   +S   +P + +E +K+  
Sbjct: 225 ANKQYWKPEDV-----KLDNLVFAITPDAASRLQKLKAGECQVSGYPRPAD-IEVMKQDP 278

Query: 365 NESAPARLAFGPRVIGYNMHMNFSGNGWGDPDERAKAVRELNRNLDFRKAVTMAVDRKKL 424
           N     +  F    + YN+           P ++ K           R+A+ MA+D+  +
Sbjct: 279 NLHVLQQAGFNLGFLAYNV--------THPPLDQLKV----------RQALDMAIDKPAI 320

Query: 425 GEALVKG----PFTAIYPGGLSSGTSFYDRNSTIYYPHDLEGAKVLLEKVGL 472
            +A+ +        A+ P   S   +  D       P+D   AK LL++ G+
Sbjct: 321 IKAVYQSAGQLAQNALPPAQWSYDPTIKDA------PYDPTKAKALLKEAGV 366