Pairwise Alignments

Query, 693 a.a., ABC transporter for D-Raffinose, periplasmic substrate-binding protein (from data) from Sinorhizobium meliloti 1021

Subject, 542 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 67.8 bits (164), Expect = 1e-15
 Identities = 118/505 (23%), Positives = 209/505 (41%), Gaps = 97/505 (19%)

Query: 144 LFQVEADDMEPLPNLAKSWDWSEDGRKLTMHLIEGAKWSDGD------PFDADDVMFYWE 197
           L Q E      +P LA SWD S DG   T HL +G K+           F+ADDV+F + 
Sbjct: 61  LTQFERGGTAVIPGLATSWDVSPDGLTYTFHLRDGVKFHTTSYFKPTRTFNADDVLFTF- 119

Query: 198 DNVLDSSVSPLNGATPETF------GEGTTLK---KIDQYTVEWTF--KEAFPRQHLFAM 246
            N + +   P   A P  F      G  T +K   K+D++TV++T    +A   Q+L AM
Sbjct: 120 -NRMINKDDPFRKAYPTEFPYFTDMGMDTNIKNIEKVDEHTVKFTLGTVDAAFIQNL-AM 177

Query: 247 AYGTFCPGPSHILKTKHPKYAGTTYNEYKNGFPAEYMNLPV-MGAWVPVAYRPDDIIVLR 305
           ++ +           +  +YA       K G PA+    P+  G +V  +Y+ D  I   
Sbjct: 178 SFASI----------QSAEYAAQL---LKEGKPADINQKPIGTGPFVFKSYQKDSNIRYT 224

Query: 306 RNPYYWKVDEAGNQLPYLNELHYKLSTWADRDVQAI-AGSGDISNLEQPENFVESLKRAA 364
            N  YWK ++       ++ L + ++T     +Q +      I+   +P + +++L    
Sbjct: 225 GNKDYWKPEDV-----KIDNLIFAITTDPSVRIQKLKKNECQITLFPRPAD-LKALGDDK 278

Query: 365 NESAPARLAFGPRVIGYNMHMNFSGNGWGDPDERAKAVRELNRNLDFRKAVTMAVDRKKL 424
           +   P +  F    I YN+     G+   +P            +L  R+A+ M+V+++++
Sbjct: 279 DLKLPHQAGFNLGYIAYNVMDKVKGSDQPNP----------LADLRVRQALDMSVNKQQI 328

Query: 425 GEALVKG----PFTAIYPGGLSSGTSFYDRNSTIYYPHDLEGAKVLLEKVGLKDTDGNGF 480
            +++ +G       A+ P   S  T+  D        +D E AK LL++ G+K+      
Sbjct: 329 IDSVYQGAGQLAVNAMPPTQWSYDTTIKDAK------YDPEKAKSLLKEAGIKE------ 376

Query: 481 VNFPAGKLGGRDVEIVLLVNSDYSTDRNL-AEGMVGQMEKLGLRVVLNALDGKQRDAANY 539
                   G   V   + V   Y+ +  L AE +    +K+GL V + + +  +    + 
Sbjct: 377 --------GTEIVLWAMPVQRPYNPNAKLMAEMLQNDWKKIGLNVKITSYEWGEYIKRSK 428

Query: 540 AGRFDWMI------HRNTAEFASVVQNTPQLAPTGPRTSWHHRAPEGGEVDVMPHEQELV 593
            G    MI      + +   + +V+     L+     + W  +  +G             
Sbjct: 429 GGENQAMIIGWSGDNGDPDNWLNVLFGCDSLSGNN-FSKWCDKKFDG------------- 474

Query: 594 DIVNKFIASNDNDERTELMKQYQKV 618
            IV +  A++D  +RTEL KQ Q +
Sbjct: 475 -IVKEAKATSDVAKRTELYKQAQHI 498