Pairwise Alignments

Query, 693 a.a., ABC transporter for D-Raffinose, periplasmic substrate-binding protein (from data) from Sinorhizobium meliloti 1021

Subject, 544 a.a., Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 65.5 bits (158), Expect = 7e-15
 Identities = 112/482 (23%), Positives = 189/482 (39%), Gaps = 85/482 (17%)

Query: 58  REYREPEWVTEKFVKAGKLPPV--AERLPKEPMVFKAGNMPDGMGVYGDVMRHVIGGRP- 114
           RE ++   + +K +  GKL  V  A  L     +F A +  DG       ++  IG  P 
Sbjct: 4   REKQKQRIIWDKLMIKGKLALVTCALTLVFTSSLFAASDTADGR-----TLKLAIGPEPT 58

Query: 115 EGWNYSAGQTQGWGGIDIGMFECLTRTAPLFQVEADDMEPLPNLAKSWDWSEDGRKLTMH 174
           EG++   G + G           L   APL +  AD M     L +  D S DG+  T+ 
Sbjct: 59  EGFDPMLGWSHG---------SYLLLHAPLLKQNAD-MSWGNLLTEKVDTSPDGKIWTLT 108

Query: 175 LIEGAKWSDGDPFDADDVMFYWEDNVLDSSVSPLNGATPETFGEGTTLKKIDQYTVEWTF 234
           L  G K+SDG P  A+DV+F +  N    S   ++       G  +  + +D   +E T 
Sbjct: 109 LKPGLKFSDGSPLTAEDVVFTY--NKAAKSGGKID------MGNFSHARALDARRIEMTL 160

Query: 235 KEAFPRQHLFAMAYGTFCPGPSHILKTKHPKYAGTTYNEYKNGFPAEYMNLPVMGAWVPV 294
                 Q  F    G+    P+        +Y   T+     G           G +  V
Sbjct: 161 SHP---QSTFVNVLGSLGIVPAS-------RYDEKTFAREPIG----------AGPYRLV 200

Query: 295 AYRPDDIIVLRRNPYYWKVDEAGNQLPYLNELHYKLSTWADRD-VQAIAGSGDISNLEQP 353
           +++P   +++  NP+Y     AG +    N+ +  +  + D D   A A SG +  +   
Sbjct: 201 SFQPGQQLIVEANPWY-----AGKK----NDFNRLVFVFLDEDNAYAAARSGQLGLVRIA 251

Query: 354 ENFV-----ESLKRAANESAPARLAFGPRVIGYNMHMNFSGNGWGDPDERAKAVRELNRN 408
            +       ++LK    +S   R    P V       N    G            ++  +
Sbjct: 252 PSMAVAPQQDNLKLWVRDSVENRGIVFPMVPAGKKDANDYPVG-----------NDVTAD 300

Query: 409 LDFRKAVTMAVDRKKLGEALVKGPFTAIYPG--GLSSGTSFYDRNSTIYYPHDLEGAKVL 466
           +  R+A+  A++RK+L E +++G     Y    GL      +   S I+   D+  A+ +
Sbjct: 301 VAIRRAINYAINRKQLAEQVMEGHAIPAYSAVQGLP-----WQNPSVIFSDGDIAKARAI 355

Query: 467 LEKVGLKDTDGNGFVNFPAGKLGGRDVEIVLLVNSDYSTDRNLAEGMVGQMEKLGLRVVL 526
           LE+ G K             +  G++  + L   S  ST R+LAE +   ++ LG+ V L
Sbjct: 356 LEEAGWKINSAG------VREKAGKEARLTLWYASGDSTRRDLAEAVRAMLQPLGIVVSL 409

Query: 527 NA 528
            +
Sbjct: 410 QS 411