Pairwise Alignments

Query, 416 a.a., OMA family outer membrane protein from Sinorhizobium meliloti 1021

Subject, 379 a.a., lipoprotein required for capsular polysaccharide translocation through the outer membrane (NCBI) from Escherichia coli BW25113

 Score = 45.8 bits (107), Expect = 2e-09
 Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 20/124 (16%)

Query: 43  YRLNSGDVLTFDFLDDAELPVTA-----------TVSGAGVAQFPLIGGVEVIGLTVPEA 91
           YR+  GDVL     D  EL   A            V   G   +P IG V V+G T    
Sbjct: 85  YRVGPGDVLNVTVWDHPELTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVHVVGKT---- 140

Query: 92  LAKLRSEY--RRRDVLVDPKISLDISTFR--PIFVLGEVKTPGSFPFYS-GLTVEQAIGL 146
           LA++RS+   R    + DP++ ++I+ FR    ++ G+V   G     +  LT+  AI  
Sbjct: 141 LAEIRSDITGRLATYIADPQVDVNIAAFRSQKAYISGQVNKSGQQAITNVPLTILDAINA 200

Query: 147 AGGM 150
           AGG+
Sbjct: 201 AGGL 204



 Score = 34.3 bits (77), Expect = 6e-06
 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 16/103 (15%)

Query: 120 IFVLGEVKTPGSFPF-YSGLTVEQAIGLAGGMQVAAASASDRIVARARLRAEAEAANAEI 178
           +FV+GEVK   +    +SG+T+ +A+G A G+ +  ++AS   V R  L+ E    N +I
Sbjct: 257 VFVMGEVKKQSTLKMDFSGMTLTEALGNAEGIDMTTSNASGIFVIRP-LKGEG-GRNGKI 314

Query: 179 VHEAIYAARLVAQLKSSDKIDLADVPEVARD-----YVTGVPL 216
            +        + QL  SD   L    E         YVT  P+
Sbjct: 315 AN--------IYQLDMSDATSLVMATEFRLQPYDVVYVTTAPV 349