Pairwise Alignments

Query, 416 a.a., OMA family outer membrane protein from Sinorhizobium meliloti 1021

Subject, 379 a.a., putative O-antigen capsule outer membrane auxillary protein export channel from Escherichia coli BL21

 Score = 47.8 bits (112), Expect = 6e-10
 Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 20/129 (15%)

Query: 42  DYRLNSGDVLTFDFLDDAELPVTA-----------TVSGAGVAQFPLIGGVEVIGLTVPE 90
           +YR+  GDVL     D  EL   A            V+  G   +P IG ++V G T   
Sbjct: 84  EYRIGIGDVLMVTVWDHPELTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGKT--- 140

Query: 91  ALAKLRSEYRRR--DVLVDPKISLDISTFR--PIFVLGEVKTPGSFPFYS-GLTVEQAIG 145
            L ++R+E   R   V+  P++ + ++ FR    +V GEV   G  P  +  LT+  AI 
Sbjct: 141 -LTQVRNEITARLDSVIESPQVDVSVAAFRSQKAYVTGEVSKSGQQPITNIPLTIMDAIN 199

Query: 146 LAGGMQVAA 154
            AGG+   A
Sbjct: 200 AAGGLTADA 208



 Score = 30.0 bits (66), Expect = 1e-04
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 120 IFVLGEVKTPGSFPF-YSGLTVEQAIGLAGGMQVAAASASDRIVARA 165
           +FV+GEV    +     SG+T+ +A+G A GM    A A+   V RA
Sbjct: 257 VFVMGEVGKQSTLKMDRSGMTLAEALGNAEGMNQDVADATGIFVIRA 303