Pairwise Alignments

Query, 394 a.a., integral membrane transporter protein from Sinorhizobium meliloti 1021

Subject, 388 a.a., arabinose transporter permease from Pseudomonas simiae WCS417

 Score =  179 bits (454), Expect = 1e-49
 Identities = 114/379 (30%), Positives = 182/379 (48%), Gaps = 15/379 (3%)

Query: 1   MDKRIIWLAVGSFTMSTVGFVFSSLLPSIAADTHTTIPRSGHLITLFSLSYAIGAPLLSA 60
           M   ++ LA+ +F + T  FV   LLP +AAD   +IP +G L+T ++L  AIGAP ++ 
Sbjct: 1   MPLSLLILALSAFAIGTTEFVIMGLLPDVAADLGVSIPGAGWLVTGYALGVAIGAPFMAL 60

Query: 61  LAGAADRRRLLVTAMLVFVVGNCIAAMSVSFTTLLLAQIVMGMASGLFAATAQAAAVSLA 120
                 R+  LV  M +F++GN + A++  +  L+ A++V  +  G F       A +L 
Sbjct: 61  ATAKLPRKAALVALMGIFIIGNLLCALASDYNVLMFARVVTALCHGAFFGIGSVVAANLV 120

Query: 121 GPEHRALAISIVVGGTTFAVALGAPLGALIAAFWGWRGTFGAVALLGLTCAAVLWLRLPR 180
               RA A++++  G T A  LG PLG  +    GWR TF AV ++G+     L   LP 
Sbjct: 121 PANKRASAVALMFTGLTLANVLGVPLGTALGQEAGWRSTFWAVTVIGVVALIGLIRFLPA 180

Query: 181 GLSGTKLTMSERFGAIGRPGVASSLMVTFLYLTGGFMIISYLAPLAIDGAGLSQLALPGL 240
                KL M     A+   G+  SL +T L+    F + +Y+APL  D  G+S   +   
Sbjct: 181 KRDEEKLDMRAELAALKGAGIWLSLSMTALFAASMFTLFTYVAPLLGDVTGVSPKGVTWT 240

Query: 241 LLAFGVGAVIGNLSSGYLADRLGATRVVTASLISALAVSLMIAFGLHFLTRDLAGLLLIG 300
           LL  G+G  +GN+  G LAD+  A  ++   +  A+  + +    +  +  ++   L   
Sbjct: 241 LLLIGLGLTVGNIIGGKLADKRLAATLIGVFISMAVVSTALTWTSVAVIPTEITLFL--- 297

Query: 301 IMVPWGIVGWAFPPAQASRIVGFAPEVAHLTLSLNASAIYLGIATGTAIGGRVLENTAAA 360
               W    +A  PA    +V F     +L  +LN  A  +G A G  +GG V+ +    
Sbjct: 298 ----WATASFAAVPALQINVVTFGKAAPNLVSTLNIGAFNIGNALGAWVGGSVIAH---- 349

Query: 361 DLGFFAALFPVAS--LAVL 377
             GF     P+A+  LA+L
Sbjct: 350 --GFGLTRVPLAAAVLAIL 366