Pairwise Alignments

Query, 453 a.a., reverse transcriptasematurase from Sinorhizobium meliloti 1021

Subject, 623 a.a., Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  140 bits (352), Expect = 2e-37
 Identities = 110/337 (32%), Positives = 165/337 (48%), Gaps = 43/337 (12%)

Query: 93  RVLAGTYRPMPVRRVTIPKPDGGERELGIPTVTDRLIQQALLQVLQPLLDPAFSEHSHGF 152
           R+    YR +P++RV IPK DG ER LGIPT+ DR +Q   L  ++P  +     +S+GF
Sbjct: 154 RLSTNGYRALPLKRVWIPKADGKERPLGIPTMRDRAMQALCLLAMEPAAECHADPNSYGF 213

Query: 153 RPGRSAHDAVLEAQSYVQSGRRI----VVDVDLEKFFDRVNHDILID--RLSKRISDRRV 206
           R GRS HDA  + Q ++   ++     V+D D+  FFD +NHD L+   R++KR+     
Sbjct: 214 RKGRSTHDA--QQQLFLSLSKKASACWVLDADITGFFDNINHDWLLANVRMNKRV----- 266

Query: 207 IRLIRAYLNSGIMDHGVVQERVMGTPQGGPLSPLLANVLLDEVDKELERRGHC------- 259
              +  +L  G++D   +Q+   GTPQGG +SPLLAN+ LD ++  L R           
Sbjct: 267 ---LGQWLRCGVVDKQQLQKTEAGTPQGGIISPLLANLTLDGLEVGLRRFLQSQMGIAQA 323

Query: 260 ------FVRYADDCNVYVGSRKAGERVM-----ALLRRLYGRLHLTINEGKSAVTSV-FG 307
                  VRYADD  V   S++  E V+     A LR    +LH     GK+ +  +  G
Sbjct: 324 RKAKVNLVRYADDFVVTGDSKEVLETVVRPWVEAFLRERGLQLH----AGKTRIVHIDEG 379

Query: 308 RKFLGFSFWRGRDGAVKRRVADKPLNAFKRRVRQLTRRSGGRSMAEVAERLRVYVLGWKA 367
             FLG++F R     +  + + K + AF  +VR +      +  A +  +L   + GW  
Sbjct: 380 FDFLGWNF-RKYSEKLLIKPSQKNVKAFYGKVRDVIASHLSQPKAVLIAKLNPILRGWAQ 438

Query: 368 YFRLAQTPRLFKELEE---WMRHRVRAIQLKHWKRGK 401
           Y R A     F +L+    W   R    +   W RGK
Sbjct: 439 YHRGAVAKATFTKLDHQILWRLWRWGMRRHSRWTRGK 475