Pairwise Alignments

Query, 453 a.a., reverse transcriptasematurase from Sinorhizobium meliloti 1021

Subject, 507 a.a., group II intron reverse transcriptase/maturase from Escherichia coli ECOR38

 Score =  157 bits (396), Expect = 1e-42
 Identities = 127/422 (30%), Positives = 197/422 (46%), Gaps = 52/422 (12%)

Query: 23  LSEPGSDEATCPRCDAQSTGPGLLEAALARENLQRAWKRVKANKGA--AGADGLSIEATA 80
           +SE     AT    D       LL      E L  A +   ++KGA   G DG++     
Sbjct: 3   ISEMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQ 62

Query: 81  AHLRTSWPDIRERVLAGTYRPMPVRRVTIPKPDGGERELGIPTVTDRLIQQALLQVLQPL 140
           A L      +R+ +L+G Y+P+P RRV IPK +G  R LGIP + DR++Q+A+L  ++P+
Sbjct: 63  ARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPI 122

Query: 141 LDPAFSEHSHGFRPGRSAHDAV----LEAQSYVQSGRRIVVDVDLEKFFDRVNHDILIDR 196
            +  F   S+GFRP RS H A+    L+     ++  R V++ DL  +FD V+H +L+  
Sbjct: 123 WESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKA 182

Query: 197 LSKRISDRRVIRLIRAYLNSGIMDHGVVQERVMGTPQGGPLSPLLANVLLDEVDKELERR 256
           + +RISD R + L+   + +G +D G+ +    G PQGG +SPLL+N++L+E D+ L  R
Sbjct: 183 VRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHER 242

Query: 257 ---------------------------------GHCFVRYADDCNVYV-GSRKAGERVMA 282
                                               + RYADD  + V G++   E +  
Sbjct: 243 YLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQAEAIRE 302

Query: 283 LLRR-LYGRLHLTINEGKSAVTSV-FGRKFLGFSFWRGRDGAVKRRVADK-PLNAFKRRV 339
             R  L G L L +N  K+ +T V  G  FLG    R R    + RV    P    +   
Sbjct: 303 ECRGVLKGSLKLRLNMDKTKITHVNDGFIFLGHRIIRKRSRYGEMRVVSTIPQEKARNFA 362

Query: 340 RQLTRRSGG---RSMAEVAERLRVYVLGWKAYFRLAQ-TPRLFKELEEWMRHRVRAIQLK 395
             LT    G    S  ++AE+L   + GW  +++      ++F  ++     RV   +L 
Sbjct: 363 ASLTALLSGNYSESKVDMAEQLNRKLKGWAMFYQFVDFKAKVFSYID-----RVVFWKLA 417

Query: 396 HW 397
           HW
Sbjct: 418 HW 419