Pairwise Alignments

Query, 399 a.a., choline uptake ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 508 a.a., ABC transporter, substrate-binding protein (cluster 13, osmolytes) / ABC transporter, permease protein (cluster 13, osmolytes) from Variovorax sp. SCN45

 Score =  142 bits (357), Expect = 3e-38
 Identities = 86/207 (41%), Positives = 114/207 (55%), Gaps = 16/207 (7%)

Query: 184 WTEAGRHVTLALGSLAAATIVGLPLGILCHRVERLRAGVLNVLNAIQTIPSIALFGILIA 243
           W  A +H+ L   S+  A ++G+P+ IL     RLRA VL   + +QT+PS+AL  +LI+
Sbjct: 309 WKLARQHLFLVALSVGIAILIGVPIAILVFPHVRLRAVVLGFASLLQTVPSLALLAVLIS 368

Query: 244 PLGWIAANVPGAAAIGIRGIGAAPAFVALFLYSLLPVVANTVVGLAGVPHAANDAARGIG 303
            LG                IGA PA +AL LYSLLP++ NTV GLA VP+    A   +G
Sbjct: 369 MLG---------------AIGALPALIALTLYSLLPIMRNTVTGLAEVPNGLRLAGTALG 413

Query: 304 MTDRQRLVAIEFPLAFPVILTGIRIVLVQNIGLATIAALIGGGGFGVFVFQGVGQTAMDL 363
           MT  Q L  +  PLA P +L G+R      IG ATIAA IG GGFG  +  G+     +L
Sbjct: 414 MTPPQSLRLVLLPLALPTLLAGVRTATAIAIGTATIAAFIGAGGFGERIVTGLALNDREL 473

Query: 364 VLLGAIPTVVLAFTAAIVLDALIEMTM 390
           +L GA+P   LA  +  V + LIE  M
Sbjct: 474 LLAGALPAAALALVSEGVFE-LIEFLM 499