Pairwise Alignments

Query, 298 a.a., ABC transporter for L-Fucose, permease component 1 (from data) from Sinorhizobium meliloti 1021

Subject, 320 a.a., carbohydrate ABC transporter membrane protein 1, CUT1 family from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  138 bits (347), Expect = 2e-37
 Identities = 81/288 (28%), Positives = 143/288 (49%), Gaps = 10/288 (3%)

Query: 5   KLSAPTLLLLPAFIVLAVFIVLPLIFSLYSSFTPFRLTKPDSLWVFIGFRNYV------- 57
           +L A  L L P  + L +    PL+ + + S T   L+   S   F+G  NY+       
Sbjct: 25  RLRAAWLFLTPMLVCLVLVAAWPLLRTFWFSLTDADLSDTGS-GSFVGLSNYLLYDGVIW 83

Query: 58  -NVLTNAEFWVAFGRTVLLLTVALNAEMFLGLGLALLVNKATYGQRALRTAMMFPMMFSP 116
             VL + ++W A   T+    V++  EM LGL +ALL+N    G+  +R  ++ P     
Sbjct: 84  SGVLVDPQWWNAVRNTLYFTVVSVGLEMVLGLMVALLLNVKFTGRALVRALILIPWAIPT 143

Query: 117 VLVGFQFKFLFNDNIGFVNNALQSLGLTDRAIPWLIDGNLALFSIIVAEVWSSTAVFAIL 176
           ++    + ++ ND  G +N+ + SLGL D  + W  D +L+++++I+ +VW +     +L
Sbjct: 144 IVSAKIWSWMLNDQFGIINHMMLSLGLIDAPLAWTADADLSMWAVIIVDVWKTVPFVTLL 203

Query: 177 ILAGLLAMPKDPVEAAHVDGCTPWQTFRYVTWPYLMPFAFIAMTIRSLDVARAYDIVKIM 236
           +LA L  +P D  EAA VDG  P + F  VT P LMP   +A   R LD  R +D++ ++
Sbjct: 204 MLAALQMLPSDCYEAARVDGIHPVRVFWRVTLPLLMPALLVAAIFRILDSLRVFDVIYVL 263

Query: 237 TDGGPAKRTELLWTLIGRTAYGDARMGMANAMAYVAILLSIFFTVYFF 284
           T    +  +  ++       + D   G A A   + +++++   +Y +
Sbjct: 264 TSNSSSTMSMSVYARQHLVEFQDVGYGSA-ASTLLFLVVAVIAMLYLY 310