Pairwise Alignments

Query, 298 a.a., ABC transporter for L-Fucose, permease component 1 (from data) from Sinorhizobium meliloti 1021

Subject, 302 a.a., Glucose ABC transport system, inner membrane component 1 from Pseudomonas sp. S08-1

 Score =  116 bits (290), Expect = 7e-31
 Identities = 76/285 (26%), Positives = 143/285 (50%), Gaps = 7/285 (2%)

Query: 9   PTLLLLPAFIVLAVFIVLPLIFSLYSSFTPFRLTKPDSLWVFIGFRNYVNVLTNAEFWVA 68
           P L+L P+ +++ V     ++++   SFT  R   P   WV  G + Y  +L N  +WVA
Sbjct: 21  PKLVLAPSVLIVLVGFYGYILWTFLLSFTNSRFM-PSYKWV--GLQQYERLLDNDRWWVA 77

Query: 69  FGRTVLLLTVALNAEMFLGLGLALLVNKATYGQRALRTAMMFPMMFSPVLVGFQFKFLFN 128
               ++   + +   + LG+ LA+L+++    +  +RT  ++PM  S ++ G  +K+L N
Sbjct: 78  SHNLLVFGGLFIAISLVLGVFLAVLLDQRIRREGFIRTVYLYPMALSMIVTGTAWKWLLN 137

Query: 129 DNIGFVNNALQSLGLTDRAIPWLIDGNLALFSIIVAEVWSSTAVFAILILAGLLAMPKDP 188
             +G ++  ++  G     + WL+D +  ++ +++A VW S+     L LAGL  + +  
Sbjct: 138 PGLG-LDKLMRDWGWEGFRLDWLVDPDRVVYCLVIAAVWQSSGFVMALFLAGLRGVDQSI 196

Query: 189 VEAAHVDGCTPWQTFRYVTWPYLMPFAFIAMTIRSLDVARAYDIVKIMTDGGPAKRTEL- 247
           + AA VDG +    +  +  P L P  F A+ I +    +++D+V  MT GGP   ++L 
Sbjct: 197 IRAAQVDGASLPTIYLRIVLPSLRPVFFSALMILAHIAIKSFDLVAAMTAGGPGYSSDLP 256

Query: 248 -LWTLIGRTAYGDARMGMANAMAYVAILLSIFFTVYFFRKLAAAR 291
            ++        G   +G A+AM  +  +L+I    Y + +L   R
Sbjct: 257 AMFMYAHTFTRGQMGLGAASAMLMLGAVLAI-IVPYLYSELRNKR 300