Pairwise Alignments

Query, 636 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

Subject, 837 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Sphingobium sp. HT1-2

 Score =  387 bits (994), Expect = e-111
 Identities = 226/589 (38%), Positives = 322/589 (54%), Gaps = 20/589 (3%)

Query: 50  ATQSAFPAFIEPCHPTLKKRPPDGADWVHEIKLDGYRAQLHINGGKITLYTRTGLDWTTE 109
           A   A P FI+P   TL    P G +W+HEIK DGYRA + ++G  I +YTR+GLDWT +
Sbjct: 229 ARTEAMPRFIKPQLATLVDNVPVGNEWMHEIKYDGYRALVAVSGEAIKIYTRSGLDWTDK 288

Query: 110 FEAIATAAEDLAGHDVVMDGEVTVFGKTGLPDFQALRREL-----AKRSSPNLTFQAFDL 164
           F  +A A + L     ++DGE+  F   G P F AL+  L     A+R+     F AFDL
Sbjct: 289 FSPLAGAIKALDLPPALIDGEIIAFDADGNPSFSALQAVLKRGHGAERADTPFHFFAFDL 348

Query: 165 LHLDGYDLRRVPLIERKRVLRELIGDAAGTIAYVDYLELEEGEPVYRHACKMGLEGIVSK 224
           L LDG DL+ +P IERK  L  L+ DA   I   D+L +  GE +YR  C+ G EGI++K
Sbjct: 349 LSLDGMDLKSLPAIERKERLEALLADAEQPIHVADHL-IGSGEKLYRSLCQAGQEGIIAK 407

Query: 225 RKDAPYRSGRQEIWTKTKCTKRDAFPIVAFVEKLGAQPRRIASLYLGRWEGDRLVYAGKA 284
           R DAPYRSGR   W K KCT+R  F IV +     A+ R  +SL LG+ EG  LVY GK 
Sbjct: 408 RVDAPYRSGRTRAWVKVKCTRRQEFVIVGWTRSK-AKGRAFSSLLLGQHEGSELVYKGKV 466

Query: 285 QTGYTLTAAREVRERLNPLIIGKSPLSHPINKPK-ATWVEPQVYAEIDYGGVTDDGLLRE 343
            TG+      ++ E + P+  G   +     + +   WVEP++ AE+ +   T +G +R 
Sbjct: 467 GTGFDAATMTDLAEAMGPISTGTPQVIISAREARDVQWVEPRLVAEVSFAEFTGEGRVRH 526

Query: 344 PVFKGLQDVSRAAGKPKPTTAPASIRVPPANILQLLPEAVV------PSKEELANYWTRV 397
             F GL+    A        AP     P A ++++   A V       +K  LA+Y+ R+
Sbjct: 527 GSFLGLRSDKLAKTVKPEKAAPTP---PSATVIKISNRARVIFPESGQTKGVLADYYARI 583

Query: 398 ADRALHFLGGRPLKLVRHIHGTT---FYHKGPLPPIPPEVHQLRIEKREGGAGVRLWVDD 454
           A   L F   RP+ LVR   G     F+ K         V  + I ++ GG+   L+VDD
Sbjct: 584 APLMLSFAANRPISLVRCPQGRAKKCFFQKHDSGAFGDHVRHVAIREKNGGSEDYLYVDD 643

Query: 455 LAGLLGLVEIGAVELHPWAASVDDIEHADALIFDLDPGEGVSWAFVVETALRLREFLEAE 514
             GL+  V++G +E H WA+  D +E  D +IFDLDP EG+ +A V + A  +R+ L   
Sbjct: 644 TDGLIACVQMGTIEFHGWASRADAVEKPDRMIFDLDPDEGMDFAQVSQAAKDIRDHLREI 703

Query: 515 GFKTWPKLTGGKGVHLMSPLPAKMTHNAAHAYAKRLAQQFASTDPDRYVTSAQLSRRPGK 574
           G  ++  L+GGKGVH++ PL      +A   +A R AQ  ++ +PDR+V +   ++R  +
Sbjct: 704 GLISFAMLSGGKGVHVVVPLSPTHDWDAHKDFAARFAQALSAAEPDRFVATMSKAKRKDR 763

Query: 575 LFLDYLRNGRGTTAVGTYSPRARSGFPVAAPVTWRDIERGIKPDAFTIG 623
           +F+D+LRN RG+TA+  YS RAR+G PVA PV W ++        F IG
Sbjct: 764 IFIDWLRNQRGSTAILPYSARARAGAPVAIPVDWNELNDLQDAHPFDIG 812