Pairwise Alignments

Query, 636 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

Subject, 833 a.a., DNA ligase D from Pseudomonas putida KT2440

 Score =  286 bits (731), Expect = 3e-81
 Identities = 191/579 (32%), Positives = 282/579 (48%), Gaps = 31/579 (5%)

Query: 56  PAFIEPCHPTLKKRPPDGADWVHEIKLDGYRAQLHINGGKITLYTRTGLDWTTEFEAIAT 115
           PA ++P   TL   PP G DW +E+K DGYR    I G  I L+TR G DW+++      
Sbjct: 214 PAQLQPQLATLVDSPPSG-DWRYEVKFDGYRILARIEGQDIRLFTRNGHDWSSKMPRQVA 272

Query: 116 AAEDLAGHDVVMDGEVTVFGKTGLPDFQALRRELAKRSSPNLTFQAFDLLHLDGYDLRRV 175
           A   L      +DGE+ V  + G+ DFQAL+          +T+  FDL  L G DLR++
Sbjct: 273 ALRALGIDSAWLDGEMVVADENGMADFQALQNAFDTEHDERITYYLFDLPFLGGQDLRQL 332

Query: 176 PLIERKRVLRELIG-DAAGTIAYVDYLELEEGEPVYRHACKMGLEGIVSKRKDAPYRSGR 234
           PL  R+  LR+L+  +    I Y    + E  + +   AC++ LEG++ KR D+ Y   R
Sbjct: 333 PLQNRRNTLRQLLEHNHCDVIKYSADFD-EPVQSLLDSACRLKLEGLIGKRVDSVYSGRR 391

Query: 235 QEIWTKTKCTKRDAFPIVAFVEKLGAQPRRIASLYLGRWEGD--RLVYAGKAQTGYTLTA 292
              W K KC +R  F IV + +  G++     +L L   + D  +L YAGK  TG+  T 
Sbjct: 392 SPDWIKLKCKQRQEFVIVGYTDPKGSRSG-FGALLLALHDNDSGQLRYAGKVGTGFNATT 450

Query: 293 AREVRERLNPLIIGKSPLSHPINKPKAT---WVEPQVYAEIDYGGVTDDGLLREPVFKGL 349
              +  RL PL I +  L  P    +A    W+ PQ+ AE+ +  +T DG++R  VF GL
Sbjct: 451 LASIHARLKPLEIARPALPSPPAGAEARGVHWLRPQLLAEVAFAQMTRDGIVRHSVFHGL 510

Query: 350 QDVSRAAGKPKPTTAPA---SIRVPPANILQLL-------PEAVVP-----SKEELANYW 394
           +D   A         PA   S R   A   + L       P+ V+      +K E+A Y+
Sbjct: 511 RDDKAATAIDLERAMPAKTVSNRNKQAKASENLGELRLTHPDRVIDPTTGVTKREVAEYY 570

Query: 395 TRVADRALHFLGGRPLKLVRH---IHGTTFYHKGPLPPIPPEVHQLRIEKREGGAGVRLW 451
             ++   L  L  RP+ LVR    + G  F+ K       P V  L  EK E G    + 
Sbjct: 571 AGISQWILPQLKHRPVALVRAPDGLGGELFFQKNAGQLYIPNV--LSYEKAEAGQAAMV- 627

Query: 452 VDDLAGLLGLVEIGAVELHPWAASVDDIEHADALIFDLDPGEGVSWAFVVETALRLREFL 511
           ++    LLG V++  +ELH W A+  D +  D  + DLDP   + W  +VE        L
Sbjct: 628 INRADTLLGAVQMNMLELHTWNATDKDFDKPDRFVLDLDPDPALPWKAMVEATQLTLTLL 687

Query: 512 EAEGFKTWPKLTGGKGVHLMSPLPAKMTHNAAHAYAKRLAQQFASTDPDRYVTSAQLSRR 571
           +  G K + K +GGKG+H++ PL  +   +    ++  +    A   P+R    +    R
Sbjct: 688 DELGLKVFLKTSGGKGIHVVVPLTRRAGWDEVKDFSHAIVNYLAKLFPERLSAVSGPKNR 747

Query: 572 PGKLFLDYLRNGRGTTAVGTYSPRARSGFPVAAPVTWRD 610
            G++F+DYLRNG+G T    YS RAR G PV+ P+ WR+
Sbjct: 748 VGRIFIDYLRNGKGATTACAYSLRARDGLPVSVPI-WRE 785