Pairwise Alignments

Query, 557 a.a., oligopeptidemurein peptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 625 a.a., dipeptide ABC transporter ATP-binding protein from Serratia liquefaciens MT49

 Score =  348 bits (892), Expect = e-100
 Identities = 216/559 (38%), Positives = 317/559 (56%), Gaps = 22/559 (3%)

Query: 10  LLRVENLGLRHVSGSATTPILSDVSFELGRGEILGIIGESGAGKSTVGNAILGLLSPEFQ 69
           +L V +L ++      T   + ++SF+L RGE L I+GESG+GKS    A++ L+     
Sbjct: 21  VLSVRDLSVQFQQQGDTVEAVRNLSFDLDRGETLAIVGESGSGKSVTSLALMRLVEQGGG 80

Query: 70  Q-TSGTIEF---DGKAIDGMTADER--ETLRGRRISAIFQDHTASLDPLMSVGAQVEETC 123
              SGT+ F   +G+ +D   A +    T+RG  ++ IFQ+   SL+P+  VG Q+ E+ 
Sbjct: 81  NIVSGTMPFRRRNGEVLDLAHARQGTLRTVRGADMAMIFQEPMTSLNPVFPVGEQIAES- 139

Query: 124 LALDSSLSRREARARAIDLLARVGIPEPERRYRNYPHQFSGGQRQRVVIAIALAGSPDII 183
           L L  ++  R AR  A+ +L  V IPE +     YPHQ SGG RQRV+IA+AL+  P ++
Sbjct: 140 LRLHQAMDHRAARQAALQMLDLVRIPETKDVLNRYPHQLSGGMRQRVMIAMALSCKPALL 199

Query: 184 IADEPTSALDATVQKQVLELLKILVDETGVSIILVTHDMGVISEITNRVLVMRKGQVVEA 243
           IADEPT+ALD T+Q Q+L+L+++L  E  + +I +THDMGV++EI +RVLVMR+G+ VE 
Sbjct: 200 IADEPTTALDVTIQAQILQLIRVLQQEMQMGVIFITHDMGVVAEIADRVLVMRQGEQVEQ 259

Query: 244 DRTTAILDQPRHDYTKKLLAAVPRLR------IPTR--TAKAEDNGRQADSPAIDSDQNP 295
                +   P+  YT+ LLAAVPRL        P +       DNG   D+  +     P
Sbjct: 260 GPVRELFAAPQQPYTQALLAAVPRLGSMADLDFPAKFPLPNGADNGGPQDT--VPPGATP 317

Query: 296 LLIAEGLSKQFAPQGFAWGIGRGKPR--FGLRDVGIRLARGSITGIVGESGSGKTTFGRI 353
           +L  E L  +F  +    GI     R    + +V   L  G   G+VGESG GK+T GR 
Sbjct: 318 ILRVENLVTRFDLRS---GILNRVTRRVHAVENVSFDLYPGETLGLVGESGCGKSTTGRS 374

Query: 354 LAGLDTAPTGRITIGEHPFDVSQSGRRSGLLGRVQMIFQDPSVSLNPRMTIGETLDESIR 413
           L  L  +  G IT      +  +      L   +Q IFQDP  SL+PR+T+G ++ E + 
Sbjct: 375 LLKLVDSQRGTITFDGRQINQLKGPALQHLRRDIQFIFQDPYASLDPRLTVGFSIMEPLL 434

Query: 414 FGARIRSGEEPADLAAMMDRLGLPRSLLGRHPHQLSGGQKQRVCIARALLARPEIIVADE 473
                R       +A +++R+GL      R+PH+ SGGQ+QR+CIARAL   P++++ADE
Sbjct: 435 VHNVARGKAAQERVAWLLERVGLKPEHARRYPHEFSGGQRQRICIARALALNPKVVIADE 494

Query: 474 PTSALDVSVQAEIVQLLKDTIAERAMTMVFISHDLAIVQAMCSSVYIFKDGRIEDFGPTE 533
             SALDVS+QA+IV LL D   E  +  +FISHD+A+V+ +   V +   G+I + GP  
Sbjct: 495 SVSALDVSIQAQIVNLLLDLQREFGIAFLFISHDMAVVERISHRVAVMYLGQIVEIGPRR 554

Query: 534 FIFSRSDNPYTRALINARP 552
            +F    + YTR L+ A P
Sbjct: 555 AVFENPQHAYTRKLMAAVP 573



 Score =  197 bits (502), Expect = 8e-55
 Identities = 121/272 (44%), Positives = 169/272 (62%), Gaps = 15/272 (5%)

Query: 2   TVEHVTTPLLRVENLGLRH-----VSGSATTPI--LSDVSFELGRGEILGIIGESGAGKS 54
           TV    TP+LRVENL  R      +    T  +  + +VSF+L  GE LG++GESG GKS
Sbjct: 310 TVPPGATPILRVENLVTRFDLRSGILNRVTRRVHAVENVSFDLYPGETLGLVGESGCGKS 369

Query: 55  TVGNAILGLLSPEFQQTSGTIEFDGKAIDGMTADERETLRGRRISAIFQDHTASLDPLMS 114
           T G ++L L+  +     GTI FDG+ I+ +     + LR R I  IFQD  ASLDP ++
Sbjct: 370 TTGRSLLKLVDSQ----RGTITFDGRQINQLKGPALQHLR-RDIQFIFQDPYASLDPRLT 424

Query: 115 VGAQVEETCLALDSSLSRREARARAIDLLARVGIPEPERRYRNYPHQFSGGQRQRVVIAI 174
           VG  + E  L + +    + A+ R   LL RVG+ +PE   R YPH+FSGGQRQR+ IA 
Sbjct: 425 VGFSIMEP-LLVHNVARGKAAQERVAWLLERVGL-KPEHA-RRYPHEFSGGQRQRICIAR 481

Query: 175 ALAGSPDIIIADEPTSALDATVQKQVLELLKILVDETGVSIILVTHDMGVISEITNRVLV 234
           ALA +P ++IADE  SALD ++Q Q++ LL  L  E G++ + ++HDM V+  I++RV V
Sbjct: 482 ALALNPKVVIADESVSALDVSIQAQIVNLLLDLQREFGIAFLFISHDMAVVERISHRVAV 541

Query: 235 MRKGQVVEADRTTAILDQPRHDYTKKLLAAVP 266
           M  GQ+VE     A+ + P+H YT+KL+AAVP
Sbjct: 542 MYLGQIVEIGPRRAVFENPQHAYTRKLMAAVP 573



 Score =  154 bits (390), Expect = 8e-42
 Identities = 98/271 (36%), Positives = 143/271 (52%), Gaps = 21/271 (7%)

Query: 296 LLIAEGLSKQFAPQGFAWGIGRGKPRFGLRDVGIRLARGSITGIVGESGSGKTTFGRILA 355
           +L    LS QF  QG             +R++   L RG    IVGESGSGK+     L 
Sbjct: 21  VLSVRDLSVQFQQQGDTVE--------AVRNLSFDLDRGETLAIVGESGSGKSVTSLALM 72

Query: 356 GLDTAPTGRITIGEHPFD------VSQSGRRSGLLGRVQ-----MIFQDPSVSLNPRMTI 404
            L     G I  G  PF       +  +  R G L  V+     MIFQ+P  SLNP   +
Sbjct: 73  RLVEQGGGNIVSGTMPFRRRNGEVLDLAHARQGTLRTVRGADMAMIFQEPMTSLNPVFPV 132

Query: 405 GETLDESIRFGARIRSGEEPADLAAMMDRLGLP--RSLLGRHPHQLSGGQKQRVCIARAL 462
           GE + ES+R    +           M+D + +P  + +L R+PHQLSGG +QRV IA AL
Sbjct: 133 GEQIAESLRLHQAMDHRAARQAALQMLDLVRIPETKDVLNRYPHQLSGGMRQRVMIAMAL 192

Query: 463 LARPEIIVADEPTSALDVSVQAEIVQLLKDTIAERAMTMVFISHDLAIVQAMCSSVYIFK 522
             +P +++ADEPT+ALDV++QA+I+QL++    E  M ++FI+HD+ +V  +   V + +
Sbjct: 193 SCKPALLIADEPTTALDVTIQAQILQLIRVLQQEMQMGVIFITHDMGVVAEIADRVLVMR 252

Query: 523 DGRIEDFGPTEFIFSRSDNPYTRALINARPQ 553
            G   + GP   +F+    PYT+AL+ A P+
Sbjct: 253 QGEQVEQGPVRELFAAPQQPYTQALLAAVPR 283