Pairwise Alignments

Query, 343 a.a., sugar ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 318 a.a., D-ribose ABC transporter, substrate-binding component RbsB (from data) from Pseudomonas simiae WCS417

 Score = 81.6 bits (200), Expect = 2e-20
 Identities = 77/297 (25%), Positives = 130/297 (43%), Gaps = 17/297 (5%)

Query: 9   SALAAALLAGTVLASGAAHAENQIAFIPKLVGVGFFTSGGAGAVKAGEEVGAK---VTYD 65
           +A +AAL   +  A  AA  + ++  + K +   FF +   GA    +E  A    +T  
Sbjct: 16  AAASAALPLSSAFADDAA--KPKVGLVMKSLANEFFVTMQDGAKTYQKEHAADFDMITNG 73

Query: 66  GPTEPSVSGQVQFINNFVNQGYNALIVSSVSPDGLCPALKRAMERGVLVMTWDSDVNPD- 124
              E   S Q+  +N  +    NA++++      L   LK+A + G+ V+  D+ ++PD 
Sbjct: 74  IKNETDTSAQIDIVNQMILAKVNAIVIAPADSKALVTVLKKASDAGIKVVNIDNRLDPDV 133

Query: 125 CRSYYIN---QGTPEQLGGLLVDMAAEGVKKEKAKVAFFYSSPTVTDQNAWAEAAKAKIA 181
            +S  ++    G   + G  LV            KV      PT T  NA    A  K A
Sbjct: 134 LKSKNLDIPFVGPDNRKGSKLVGDYLAKQLASGDKVGIIEGVPTTT--NAQQRTAGYKDA 191

Query: 182 KEHPGWEIVTTQYGYNDAQKSLQTAESILQTYPDLDAIIAPDANALPAAAQAAENLKRAE 241
            +  G +IV+TQ G  +  +  + A ++L  YPDL A++A + N    A  A     +A 
Sbjct: 192 MDAAGMKIVSTQSGNWEIDQGQKVASAMLSEYPDLKALLAGNDNMALGAVSAVRAAGKAG 251

Query: 242 GVTIVGFSTPNVMRPYIERGTIQRFGLWDVTQQGKISVFVADHVLKNGPMKVGEKLE 298
            V +VG+     ++P ++ G +         QQ   +VF   + LK   +  GEK++
Sbjct: 252 KVLVVGYDNIEAIKPMLQDGRVLATADQAAAQQ---AVFGIQNALK---LVKGEKVD 302