Pairwise Alignments

Query, 343 a.a., sugar ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  502 bits (1292), Expect = e-147
 Identities = 248/345 (71%), Positives = 286/345 (82%), Gaps = 3/345 (0%)

Query: 1   MIKTIMKSSALAAALLAGTVLASGA--AHAENQIAFIPKLVGVGFFTSGGAGAVKAGEEV 58
           M K + + S    ALL    LAS A    A  +IAFIPKLVGVGFFTSGG GA +AG+ +
Sbjct: 4   MEKKMARHSIKMIALLTAFGLASAAMTVQAAERIAFIPKLVGVGFFTSGGNGAQEAGKAL 63

Query: 59  GAKVTYDGPTEPSVSGQVQFINNFVNQGYNALIVSSVSPDGLCPALKRAMERGVLVMTWD 118
           G  VTYDGPTEPSVSGQVQ +NNFVNQGY+A+IVS+VSPDGLCPALKRAM+RGV ++TWD
Sbjct: 64  GIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWD 123

Query: 119 SDVNPDCRSYYINQGTPEQLGGLLVDMAAEGVKKEKAKVAFFYSSPTVTDQNAWAEAAKA 178
           SD  P+CRSYYINQGTP+QLG +LV+MAA  V KEKAKVAFFYSSPTVTDQN W + AKA
Sbjct: 124 SDTKPECRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKA 183

Query: 179 KIAKEHPGWEIVTTQYGYNDAQKSLQTAESILQTYPDLDAIIAPDANALPAAAQAAENLK 238
           KI++EHPGWEIVTTQ+GYNDA KSLQTAE I++ YPDLDAIIAPDANALPAAAQAAENLK
Sbjct: 184 KISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLK 243

Query: 239 RAEGVTIVGFSTPNVMRPYIERGTIQRFGLWDVTQQGKISVFVADHVLKNGPMKVGEKLE 298
           R   + IVGFSTPNVMRPY++RGT++ FGLWDV QQGKISV+VA+ +LKN PM VG+ L+
Sbjct: 244 R-NNLAIVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNVGDSLD 302

Query: 299 IPGVGTVEVSANKVQGYDYEADGNGIILLPERTVFTKENIGNFDF 343
           IPG+G V VS N  QGY YEA GNGI+LLPER +F K+NI  +DF
Sbjct: 303 IPGIGKVTVSPNSEQGYHYEAKGNGIVLLPERVIFNKDNIDKYDF 347