Pairwise Alignments

Query, 343 a.a., sugar ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 357 a.a., D-ribose-binding periplasmic protein from Escherichia coli BL21

 Score = 94.7 bits (234), Expect = 3e-24
 Identities = 70/298 (23%), Positives = 133/298 (44%), Gaps = 5/298 (1%)

Query: 4   TIMKSSALAAALLAGTVLASGAAHAENQIAFIPKLVGVGFFTSGGAGAVKAGEEVGAKVT 63
           T MK+     AL     ++S A   +  +  + K     F+ +   G   A +E+G K +
Sbjct: 40  TTMKTRHFIYALSLLACVSSSALAKDLNLPVVSKGFQHEFWQTVKMGTEAAAKELGDKTS 99

Query: 64  YDGPT-EPSVSGQVQFINNFVNQGYNALIVSSVSPDGLCPALKRAMERGVLVMTWDSDVN 122
           Y GP  E  ++ Q+Q + N + Q  N L+++++  + L P ++ A  RG+ V+T+DS +N
Sbjct: 100 YVGPADETQIAEQIQLVENAMAQKPNGLLLAALDANALAPLVETANSRGIKVVTFDSGIN 159

Query: 123 PDCRSYYINQGTPEQLGGLLVDMAAEGVKKEKAKVAFFYSSPTVTDQNAWAEAAKAKIAK 182
            D    ++      + G    D  A  V   K KV         +     +E    ++ +
Sbjct: 160 SDIPVSFVATNN-RKAGAQAADALASQVNN-KGKVGIIAHVAGTSSAIERSEGFMERMKE 217

Query: 183 EHPGWEIVTTQYGYNDAQKSLQTAESILQTYPDLDAIIAPDANALPAAAQAAENLKRAEG 242
           ++P  +++  QY   D QK++     ++Q  PDL  I   +  +    A A ++      
Sbjct: 218 KYPDIKVLPVQYSDGDPQKAMDKTIDMIQANPDLAGIYGTNEGSTLGVANAIDSQNLKGK 277

Query: 243 VTIVGFSTPNVMRPYIERGTIQRFGLWDVTQQGKISVFVADHVLKNGPMKVGEKLEIP 300
           V ++GF +   +  +++ G IQ F + D  Q G   +   +  L      V ++++IP
Sbjct: 278 VKVIGFDSTEAIINFLKNGVIQGFVVQDAYQIGYQGIKTLNAALSG--QAVEKEIDIP 333