Pairwise Alignments

Query, 336 a.a., sugar uptake ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 330 a.a., ribose ABC transporter permease from Pseudomonas simiae WCS417

 Score =  175 bits (443), Expect = 2e-48
 Identities = 111/309 (35%), Positives = 172/309 (55%), Gaps = 15/309 (4%)

Query: 24  AVAPFAALALLLIVGAMVNPNFISLNNLANVATRSAFIAIIAVGATFVISAGDLDLSVGS 83
           A  PF  L ++ +V  + +  F++ +NL+N+A + +  AIIAVG T VI  G +DLSVG 
Sbjct: 31  AFYPFVGLVVVTLVMILASDTFLTASNLSNIARQVSINAIIAVGMTCVILTGGIDLSVGP 90

Query: 84  MVAFVASLMILFMNSGVIADPALMLTAAVLFAVVAGSVCGLANGLITTVGRIEPFIATLG 143
           ++A   +L    M +G+   P L + A +L  V  G    + NGL      + P I TL 
Sbjct: 91  VMALSGTLTAGLMVAGL--PPGLAIGAGMLIGVAFG----IGNGLFVAYLHMPPIIVTLA 144

Query: 144 TMGIYRGLTTWLSQGGAITLREPELQELYRPAYFG--SILGMPVPIAIILAVTAVAAFIL 201
           TMGI RGL    + G  I+     L + +  A+FG  S+ G+ VPI I+L    VA  +L
Sbjct: 145 TMGIARGLGLMYTDGYPIS----GLPDWF--AFFGRESLFGIQVPILIMLLTYLVAYVLL 198

Query: 202 YRTRYGRHVVAVGSNSDVARYSGIAVNRVRTIAFVIQGLCVAVAVLLYVPRLGSTSATTG 261
             TR GR++ A+G N +  R SG+   R + + + I GL  A+A L+   RL S     G
Sbjct: 199 QHTRIGRYIYAIGGNEEAVRLSGVRAARFKLLVYGISGLTAAIAGLVLTSRLMSGQPNAG 258

Query: 262 ILWELQAITAVVVGGTALKGGAGRVWGTICGAFILELVGNIMLLSNFISEYLIGAMQGAI 321
           + +EL AI AVV+GG ++ GG G + GT+ GA +L ++ N + +   +S Y+   ++G I
Sbjct: 259 VSFELDAIAAVVLGGASIAGGRGVIVGTLLGAMLLGVLNNGLNMLG-VSPYVQSVIKGGI 317

Query: 322 IIIAMLVQR 330
           I++A+ + R
Sbjct: 318 ILLAIFISR 326