Pairwise Alignments

Query, 336 a.a., sugar uptake ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 344 a.a., ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

 Score =  313 bits (803), Expect = 3e-90
 Identities = 158/311 (50%), Positives = 217/311 (69%), Gaps = 3/311 (0%)

Query: 22  LRAVAPFAALALLLIVGAMVNPNFISLNNLANVATRSAFIAIIAVGATFVISAGDLDLSV 81
           L  + P   L LL I G ++N +F +L+N  NV TR+AFI IIAVG  FVI +G +DLSV
Sbjct: 32  LHGLGPVIGLVLLCIAGTLLNGDFATLDNAMNVLTRTAFIGIIAVGMCFVIISGGIDLSV 91

Query: 82  GSMVAFVASLMILFMN--SGVIADPALMLTAAVLFAVVAGSVCGLANGLITTVGRIEPFI 139
           GSM A +A  +I+F+N        P L +    + A+V G+V GLA+GL+ T GRIEPFI
Sbjct: 92  GSMAALIAGSVIMFINWAGPASGSPLLAVVMGAVLAIVLGAVFGLAHGLLITKGRIEPFI 151

Query: 140 ATLGTMGIYRGLTTWLSQGGAITLREPELQELYRPAYFGSILGMPVPIAIILAVTAVAAF 199
            TLGT+GI+R   T+ + GGA+TL + +L +LY P Y+ S+ G+PVP+ + + V  +   
Sbjct: 152 VTLGTLGIFRAYLTYFADGGALTL-DNDLSDLYAPVYYASLAGIPVPVWVFVIVAIIGGV 210

Query: 200 ILYRTRYGRHVVAVGSNSDVARYSGIAVNRVRTIAFVIQGLCVAVAVLLYVPRLGSTSAT 259
           IL RT YGR+V A+GSN  VARY+ + V+RV+ + +V+ G+CV +A LLYVPRLGS S T
Sbjct: 211 ILNRTAYGRYVQAIGSNEQVARYAAVDVDRVKILTYVLLGVCVGIATLLYVPRLGSASPT 270

Query: 260 TGILWELQAITAVVVGGTALKGGAGRVWGTICGAFILELVGNIMLLSNFISEYLIGAMQG 319
           TG+LWEL+AI AV+VGGTALKGGAG + GT+ GA +L ++ NI+ L++ IS YL  A+QG
Sbjct: 271 TGLLWELEAIAAVIVGGTALKGGAGSITGTVVGAILLSVISNILNLTSIISVYLNAAVQG 330

Query: 320 AIIIIAMLVQR 330
            +III   +QR
Sbjct: 331 FVIIIVAFLQR 341