Pairwise Alignments

Query, 294 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

Subject, 321 a.a., Ku protein from Paraburkholderia sabiae LMG 24235

 Score =  144 bits (363), Expect = 3e-39
 Identities = 93/298 (31%), Positives = 160/298 (53%), Gaps = 19/298 (6%)

Query: 7   WKGYIRLSLVSCPVRLYPATSASERISFNQLHKDTHNRINMKPVDPELGL-VERSDLVKG 65
           WKG I   LV  PV+LYPAT  SE++ FN L K + + I  + ++   G  V R ++V+G
Sbjct: 6   WKGAISFGLVHVPVQLYPATK-SEKVGFNLLDKRSIDPIGYRQINKRTGKEVTRENIVRG 64

Query: 66  YEYEDKKYIIIEDSDLESVRIESNHTMNIEAFVDAGSVDVIYQDAPYYLAPDGAMAEETF 125
           YEYE  KY+++ D ++ +   ES  T++I AFV+A  +  +Y D PYYL PD    E+ +
Sbjct: 65  YEYEKDKYVVLTDEEIRAANPESTQTIDIIAFVEAPEIPFLYLDTPYYLTPD-RKGEKVY 123

Query: 126 VVLREALRRSGKLAIARLVLSSRERVVTIGPRETGMFVCTLRNPNEVRGTADYFGNIPVG 185
            +LR+A++ +GK+ +A +V+ +++ +  + P    + + TLR   EVR   ++       
Sbjct: 124 ALLRDAMKATGKIGVANVVMHNKQHLAALIPVGPMLALNTLRWAAEVRPFDEFKLPDESA 183

Query: 186 KPD---PEMLQLAEALIEQKTTTFDPKQYEDRYEVALMQMIREKLKG---HKPIIAQAPE 239
           K        L +A+ LI   +  +DP  Y+D +   ++ ++  K++     + +  + P 
Sbjct: 184 KKSGVTARELDMAKKLIGDMSDKWDPADYKDTFRDDILALVDRKVQAGMTEEVMDIETPR 243

Query: 240 R----GNVVNLMDALKASL----SQAKPPARSKPKAEPAAKE--PAAKAAAAKRVTAK 287
                 ++++L D LK SL     + KP AR+  + E   +E  PA   AAAK+ T +
Sbjct: 244 EARPSADILDLSDLLKRSLGRGGGKGKPAARAAARDEADTEEAAPAKPRAAAKKTTRR 301