Pairwise Alignments

Query, 294 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

Subject, 310 a.a., Ku protein from Paraburkholderia sabiae LMG 24235

 Score =  147 bits (371), Expect = 3e-40
 Identities = 108/314 (34%), Positives = 166/314 (52%), Gaps = 26/314 (8%)

Query: 1   MAPRASWKGYIRLSLVSCPVRLYPATSASERISFNQLHKDTHNRINMKPVDPELG-LVER 59
           MA R+     +   LVS PV+LY AT +S  + FN L  D  +R+  + +    G +VER
Sbjct: 1   MAARSIASLSLSFGLVSIPVKLYSATESSSDVRFNMLAPDG-SRVKQQYISESTGAVVER 59

Query: 60  SDLVKGYEYEDKKYIIIEDSDLESVRIESNHTMNIEAFVDAGSVDVIYQDAPYYLAPDGA 119
           S + KGYE+E  ++++    +L+++   ++H + I AF+   SVD +Y D  YY+APD  
Sbjct: 60  SSMKKGYEFEKDRFVVFTADELKALEESASHVVEIVAFIPEKSVDPVYYDKAYYIAPD-R 118

Query: 120 MAEETFVVLREALRRSGKLAIARLVLSSRERVVTIGPRETGMFVCTLRNPNEVRGTADYF 179
              + + +L++AL  SG+ A+A+     + R+V + P   G+    L   +EVR   D  
Sbjct: 119 RGGKPYSLLQQALAESGRCALAKWASRGKTRIVQVRPSADGLVFQQLLFADEVRSLKDL- 177

Query: 180 GNIPVGKPDPEMLQLAEALIEQKTTT-FDPKQYEDRYEVALMQMIREKLKGHKPII---A 235
            NI         L+LA  +IEQ T   +DP  YED  +  ++  I  K++G + I    A
Sbjct: 178 -NIEHVDVSASELKLAMQIIEQGTEDHYDPAAYEDEEKKRILAAIDRKIEGKQVISTERA 236

Query: 236 QAP-ERGNVVNLMDALKASL---SQAKPPARSKPKA------------EPAAKEPAAKAA 279
            AP E G V++LM+AL+ASL   ++AKP    K KA             P A++PAA+AA
Sbjct: 237 DAPAEGGEVIDLMEALRASLRGGAKAKPATAPKRKAAEPVAEVAEIAQAPRARKPAARAA 296

Query: 280 -AAKRVTAKPAAKK 292
            A     AK  A+K
Sbjct: 297 KAPAEAPAKVRARK 310