Pairwise Alignments

Query, 227 a.a., RNA polymerase sigma factor from Sinorhizobium meliloti 1021

Subject, 193 a.a., RNA polymerase sigma-H factor from Pseudomonas simiae WCS417

 Score = 83.2 bits (204), Expect = 3e-21
 Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 9/192 (4%)

Query: 1   MPTAETDLCLNAPPLAQDLARFRAIMQAHNRKLYRIARSILRNDSDAEDVLQEAYVRAFT 60
           M T E D  L       D   F  ++  +  K+  +    + +  +A+DV QEA+++A+ 
Sbjct: 1   MLTQEEDQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYR 60

Query: 61  RFEDFRGDAAITTWLARIVINEALGRL-RKGRRQMRLAKYMRQSQEAEIIAFPLNSGISD 119
              +FRGD+A  TWL RI IN A   L  +GRR          S++AE   +  + G+ D
Sbjct: 61  ALGNFRGDSAFYTWLYRIAINTAKNYLVSRGRRP---PDSDVSSEDAEF--YDGDHGLKD 115

Query: 120 ---PEKTMAQRQILDLVERLTDDLPDTYRTVFVLRVIEGLDNEEAAALLGLKPETARTRL 176
              PE+ + + +I   V R    LP+  RT   LR  +GL  E+ A+++     T R+R+
Sbjct: 116 LESPERALLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRI 175

Query: 177 HRARRILKEQLE 188
            RAR  + + L+
Sbjct: 176 FRAREAIDKALQ 187