Pairwise Alignments

Query, 227 a.a., RNA polymerase sigma factor from Sinorhizobium meliloti 1021

Subject, 225 a.a., RNA polymerase sigma factor RpoE from Variovorax sp. SCN45

 Score = 85.9 bits (211), Expect = 6e-22
 Identities = 61/195 (31%), Positives = 96/195 (49%), Gaps = 8/195 (4%)

Query: 5   ETDLCLNAPPLAQDLARFRAIMQAHNRKLYRIARSILRNDSDAEDVLQEAYVRAFTRFED 64
           E D  L    +A D   F  ++  + R++ R+   ++R+    ED+ QE ++RA+     
Sbjct: 27  EVDFQLVQRTVAGDQKAFELLVIKYQRRIERLIGRMVRDVDLIEDIAQETFIRAYRALHQ 86

Query: 65  FRGDAAITTWLARIVINEALGRLRKGRRQMRLAK-YMRQSQEAEIIAF-PLNSGISD--P 120
           FRG+A   TWL RI +N A   L   +R   +++  +R S E E   + P N   +D  P
Sbjct: 87  FRGEAQFYTWLYRIAVNTAKKALVDMKRDPTVSEAALRPSSEDEDETYRPGNEPTTDETP 146

Query: 121 EKTMAQRQILDLVERLTDDLPDTYRTVFVLRVIEGLDNEEAAALLGLKPETARTRLHRAR 180
           E  +A  +I   VE   + LP   R    LR IEG+  EE A ++     T R+R+ RAR
Sbjct: 147 ESVLAANEIARAVEAAMEALPAELRQAVTLREIEGMSYEEIAEVMDCPIGTVRSRIFRAR 206

Query: 181 RILKEQLERQIGPVL 195
               E +  ++ P+L
Sbjct: 207 ----EAISARVKPLL 217