Pairwise Alignments

Query, 384 a.a., efflux protein from Sinorhizobium meliloti 1021

Subject, 366 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  205 bits (521), Expect = 2e-57
 Identities = 125/339 (36%), Positives = 185/339 (54%), Gaps = 5/339 (1%)

Query: 24  VLSGCSQEKVETKETIRPVKVVEIAAAGEPRELHYSGSVRARTEMNLGFRVGGKITERLV 83
           +L+GC  E+   + TIRP  VV+   + +  +  Y G VRAR E +L FR+GGK+++RLV
Sbjct: 17  LLAGCGHEEA-AQTTIRPAMVVQPQPSSQSMD-SYPGEVRARYEPDLAFRIGGKVSKRLV 74

Query: 84  NIGDRVKPGDILARIDATDYRLAVTSAEANLLAAEKQVQTTALAKLRAEQLFTKSFSSQA 143
             G+RVK    LA +D  D RL + +  A +  AE  +      + R + L  +   S++
Sbjct: 75  EEGERVKANQALAELDPQDVRLQLEATRAQVAGAEANLSLVRAERDRYKTLMDRQMVSRS 134

Query: 144 QLDQATLLYDQAVSTRDAAASSLSQAKNQVSYTDLKADQNGIVTAVNADIGQVVGTGTPV 203
           Q D +  LY   V+      +    A NQ  Y  L+A Q+G+V     ++GQVV  G  V
Sbjct: 135 QYDNSENLYRAGVARLKQIKAEFDVASNQAGYAVLRAPQDGVVAKRVVEVGQVVSAGQTV 194

Query: 204 VTVAVDGEKEVEIAVPEIDVTEFKPGKPVGVRFWSNDMLVLDGHVREVSGSADQRSRTFS 263
            T+A DGE+EV I++PE     FK G+PV V  WS       G +RE+S +AD +SRTF+
Sbjct: 195 FTLATDGEREVLISLPEQGFGRFKIGQPVSVELWSQPDQRFTGRIRELSPAADPKSRTFA 254

Query: 264 VRVSLPNDE-RVLLGMTATVEAAAASSAPLVSIPLSALSKKDGQNIVWIVDRDFSTVHAR 322
            RV+    +    LG +A V        PL S+PLSALS ++G + VW V  D +T+   
Sbjct: 255 ARVAFTGGKVPAELGQSARVFIQVDGDIPL-SVPLSALSAENGASYVWRVQPD-NTLKRT 312

Query: 323 PIKLADFADNGVRVVDGLGAGDLVVAAGTQFMAEDLKVR 361
           P+++  F +  V V++GL   D V+AAG   + E  +VR
Sbjct: 313 PVRIGAFGEKTVPVLEGLSPTDWVIAAGVHVLHEGQQVR 351