Pairwise Alignments

Query, 384 a.a., efflux protein from Sinorhizobium meliloti 1021

Subject, 403 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  215 bits (548), Expect = 2e-60
 Identities = 138/366 (37%), Positives = 202/366 (55%), Gaps = 5/366 (1%)

Query: 13  ARLLTAILLGAV-LSGCSQEKVETKETIRPVKVVEIAAAGEPRELHYSGSVRARTEMNLG 71
           AR    +LL AV L GCS  K   ++ +R VK V + A+    +  +S  VRAR E  LG
Sbjct: 11  ARSAAWLLLPAVFLVGCSP-KPAAQDPVRAVKFVTVGASEFDAQPEFSAEVRARVESRLG 69

Query: 72  FRVGGKITERLVNIGDRVKPGDILARIDATDYRLAVTSAEANLLAAEKQVQTTALAKLRA 131
           FRV GKIT R   +G  V+ G +LA++D  DYRLA  +A A   AA       A    R 
Sbjct: 70  FRVAGKITRRQAELGQHVQAGQVLAQLDPQDYRLAAEAARAQQAAALTNRDLAAADLKRY 129

Query: 132 EQLFTKSFSSQAQLDQATLLYDQAVSTRDAAASSLSQAKNQVSYTDLKADQNGIVTAVNA 191
            +L  ++F S A+L++    +  A +  + A + LS   NQ +YT L AD  GI+TA+ A
Sbjct: 130 RELREQNFISGAELERRETTWKAAQAQLEQAQAQLSSQGNQANYTTLVADVAGIITAIEA 189

Query: 192 DIGQVVGTGTPVVTVAVDGEKEVEIAVPEIDVTEFKPGKPVGVRFWSNDMLVLDGHVREV 251
           + GQVV  GTPVV +A DG ++V  AVPE   T  K G PV VR WS     L G VREV
Sbjct: 190 EPGQVVQAGTPVVRIAQDGARDVVFAVPEDRATLVKTGSPVTVRGWSGGN-ELQGQVREV 248

Query: 252 SGSADQRSRTFSVRVSLPNDERVLLGMT--ATVEAAAASSAPLVSIPLSALSKKDGQNIV 309
           + SAD  +RT+S++V++       LG T  A  +A A + A ++ +P SAL ++   + V
Sbjct: 249 AASADAVTRTYSIKVAIDAATAPPLGATVYARPQALAHAGATVLKLPTSALRQEGKGSAV 308

Query: 310 WIVDRDFSTVHARPIKLADFADNGVRVVDGLGAGDLVVAAGTQFMAEDLKVRLQAGEQQS 369
           W++D+   TV ++ +++A    N   +  G+  G +VVAAG   ++   KV +   ++ +
Sbjct: 309 WVLDKSTMTVRSQAVQVATADGNEAVIASGITPGMMVVAAGVHVLSPGQKVTIYQSKEAA 368

Query: 370 AEQQSA 375
           A   +A
Sbjct: 369 AAAANA 374