Pairwise Alignments

Query, 384 a.a., efflux protein from Sinorhizobium meliloti 1021

Subject, 366 a.a., RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  197 bits (502), Expect = 3e-55
 Identities = 125/339 (36%), Positives = 179/339 (52%), Gaps = 5/339 (1%)

Query: 24  VLSGCSQEKVETKETIRPVKVVEIAAAGEPRELHYSGSVRARTEMNLGFRVGGKITERLV 83
           +L+ C QE        RP  VV+   A E     Y G VRAR E  L FR+GGK+++RLV
Sbjct: 17  LLAACGQEAAPPAAP-RPALVVQPQPA-EAAADSYPGEVRARFEPELAFRIGGKVSKRLV 74

Query: 84  NIGDRVKPGDILARIDATDYRLAVTSAEANLLAAEKQVQTTALAKLRAEQLFTKSFSSQA 143
             G RVK    LA +D  D RL + +  A L AAE  +      + R ++L  +   S +
Sbjct: 75  EEGQRVKADQPLAELDPQDVRLQLEANRAQLAAAEANLALVRAERDRYQKLLERQMVSHS 134

Query: 144 QLDQATLLYDQAVSTRDAAASSLSQAKNQVSYTDLKADQNGIVTAVNADIGQVVGTGTPV 203
           Q D A  LY   ++    A +    A NQ  Y  L+A Q G++     ++GQVV  G  V
Sbjct: 135 QYDNAENLYRAGLARLKQAKAEFDVAGNQAEYAVLRAPQAGVIAKRQVEVGQVVAAGQTV 194

Query: 204 VTVAVDGEKEVEIAVPEIDVTEFKPGKPVGVRFWSNDMLVLDGHVREVSGSADQRSRTFS 263
            T+A DGE+EV I +PE     F  G+PV V  WS+      G +RE+S +AD RSRTF+
Sbjct: 195 FTLAADGEREVAIGLPEQQFARFAVGQPVSVELWSHPQARFQGRIRELSPAADPRSRTFA 254

Query: 264 VRVSLPNDE-RVLLGMTATVEAAAASSAPLVSIPLSALSKKDGQNIVWIVDRDFSTVHAR 322
            R++         LG +A V  A     PL ++PLSA++ ++GQ  VW V+++ S +   
Sbjct: 255 ARIAFTTAAVPAELGQSARVFIAKDGLIPL-AVPLSAVTAENGQAYVWRVNKE-SRLERA 312

Query: 323 PIKLADFADNGVRVVDGLGAGDLVVAAGTQFMAEDLKVR 361
            ++L  +  + V V++GL  GD VVAAG   + E  +VR
Sbjct: 313 TVRLGAYGSDSVPVLEGLDPGDWVVAAGGHVLREGQEVR 351